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Order

Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

PKMTs methylate histone lysines

R-RNO-3214841 in Reactome release 97: under Chromatin modifying enzymes, with 57 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-3214841 (human), R-MMU-3214841 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 57 genes in this rat pathway; showing 1 to 57, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAebp2Authority297705Mapping file idENSRNOG00000008929 Ensembl fileEvidenceIEA
GeneAsh1lAuthority310638Mapping file id310638 NCBI fileEvidenceIEA
GeneAsh2lAuthority290829Mapping file id290829 NCBI fileEvidenceIEA
GeneAtf7ipAuthority312800Mapping file idENSRNOG00000008870 Ensembl fileEvidenceIEA
GeneDot1lAuthority362831Mapping file id362831 NCBI fileEvidenceIEA
GeneEedAuthority293104Mapping file idENSRNOG00000017509 Ensembl fileEvidenceIEA
GeneEhmt1Authority362078Mapping file idENSRNOG00000007242 Ensembl fileEvidenceIEA
GeneEhmt2Authority361798Mapping file idENSRNOG00000030630 Ensembl fileEvidenceIEA
GeneEzh2Authority312299Mapping file idENSRNOG00000006048 Ensembl fileEvidenceIEA
GeneH3c1Authority679994Mapping file id679994 NCBI fileEvidenceIEA
GeneH3c10Authority291159Mapping file id291159 NCBI fileEvidenceIEA
GeneH3c13Authority684762Mapping file idENSRNOG00000080043 Ensembl fileEvidenceIEA
GeneH3c15Authority310678Mapping file idENSRNOG00000070591 Ensembl fileEvidenceIEA
GeneH4c1Authority291152Mapping file id291152 NCBI fileEvidenceIEA
GeneH4c14Authority295277Mapping file id295277 NCBI fileEvidenceIEA
GeneH4c8Authority64627Mapping file id64627 NCBI fileEvidenceIEA
GeneHist1h2aoAuthority364723Mapping file idENSRNOG00000066473 Ensembl fileEvidenceIEA
GeneHist1h3bAuthority680498Mapping file id680498 NCBI fileEvidenceIEA
GeneKmt2aAuthority315606Mapping file id315606 NCBI fileEvidenceIEA
GeneKmt2bAuthority102550344Mapping file id102550344 NCBI fileEvidenceIEA
GeneKmt2cAuthority502710Mapping file idENSRNOG00000061080 Ensembl fileEvidenceIEA
GeneKmt2dAuthority100362634Mapping file id100362634 NCBI fileEvidenceIEA
GeneKmt5aAuthority689820Mapping file id689820 NCBI fileEvidenceIEA
GeneKmt5bAuthority361688Mapping file id361688 NCBI fileEvidenceIEA
GeneKmt5cAuthority308345Mapping file id308345 NCBI fileEvidenceIEA
GeneLOC147995116Authority147995116Mapping file idENSRNOG00000067648 Ensembl fileEvidenceIEA
GeneLOC148000144Authority148000144Mapping file idENSRNOG00000065263 Ensembl fileEvidenceIEA
GeneLOC148000145Authority148000145Mapping file idENSRNOG00000066835 Ensembl fileEvidenceIEA
GeneLOC148000146Authority148000146Mapping file idENSRNOG00000070513 Ensembl fileEvidenceIEA
GeneLOC148000156Authority148000156Mapping file idENSRNOG00000064755 Ensembl fileEvidenceIEA
GeneMecomAuthority294924Mapping file id294924 NCBI fileEvidenceIEA
GeneNfkb1Authority81736Mapping file id81736 NCBI fileEvidenceIEA
GeneNfkb2Authority309452Mapping file id309452 NCBI fileEvidenceIEA
GeneNsd1Authority306764Mapping file id306764 NCBI fileEvidenceIEA
GeneNsd2Authority680537Mapping file idENSRNOG00000038140 Ensembl fileEvidenceIEA
GeneNsd3Authority290831Mapping file id290831 NCBI fileEvidenceIEA
GenePrdm16Authority100366024Mapping file id100366024 NCBI fileEvidenceIEA
GenePrdm9Authority365155Mapping file id365155 NCBI fileEvidenceIEA
GeneRbbp4Authority313048Mapping file id313048 NCBI fileEvidenceIEA
GeneRbbp4l1Authority310511Mapping file idENSRNOG00000028052 Ensembl fileEvidenceIEA
GeneRbbp5Authority304794Mapping file id304794 NCBI fileEvidenceIEA
GeneRbbp7Authority83712Mapping file id83712 NCBI fileEvidenceIEA
GeneRelaAuthority309165Mapping file idENSRNOG00000030888 Ensembl fileEvidenceIEA
GeneSetd1aAuthority309001Mapping file id309001 NCBI fileEvidenceIEA
GeneSetd1bAuthority100359816Mapping file id100359816 NCBI fileEvidenceIEA
GeneSetd2Authority316013Mapping file idENSRNOG00000020915 Ensembl fileEvidenceIEA
GeneSetd3Authority299295Mapping file id299295 NCBI fileEvidenceIEA
GeneSetd6Authority291844Mapping file id291844 NCBI fileEvidenceIEA
GeneSetd7Authority689954Mapping file id689954 NCBI fileEvidenceIEA
GeneSetdb1Authority689883Mapping file id689883 NCBI fileEvidenceIEA
GeneSetdb2Authority100361710Mapping file idENSRNOG00000021680 Ensembl fileEvidenceIEA
GeneSmyd2Authority289372Mapping file id289372 NCBI fileEvidenceIEA
GeneSmyd3Authority498295Mapping file id498295 NCBI fileEvidenceIEA
GeneSuv39h1Authority302553Mapping file id302553 NCBI fileEvidenceIEA
GeneSuv39h2Authority364785Mapping file id364785 NCBI fileEvidenceIEA
GeneSuz12Authority688041Mapping file id688041 NCBI fileEvidenceIEA
GeneWdr5Authority362093Mapping file id362093 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.