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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

GPCR downstream signalling

R-RNO-388396 in Reactome release 97: under Signaling by GPCR, with 488 genes placed in it by the mapping files and 6 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-388396 (human), R-MMU-388396 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 488 genes in this rat pathway; showing 301 to 400, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 4 of 5
GeneNpy1rAuthority29358Mapping file idENSRNOG00000014149 Ensembl fileEvidenceIEA
GeneNpy4rAuthority29471Mapping file id29471 NCBI fileEvidenceIEA
GeneNpy5rAuthority25340Mapping file id25340 NCBI fileEvidenceIEA
GeneNrasAuthority24605Mapping file id24605 NCBI fileEvidenceIEA
GeneNtsAuthority299757Mapping file idENSRNOG00000004179 Ensembl fileEvidenceIEA
GeneNtsr1Authority366274Mapping file id366274 NCBI fileEvidenceIEA
GeneNtsr2Authority64636Mapping file id64636 NCBI fileEvidenceIEA
GeneObscnAuthority338458Mapping file idENSRNOG00000058068 Ensembl fileEvidenceIEA
GeneOpn1mwAuthority89810Mapping file id89810 NCBI fileEvidenceIEA
GeneOpn1swAuthority81644Mapping file id81644 NCBI fileEvidenceIEA
GeneOpn3Authority498289Mapping file id498289 NCBI fileEvidenceIEA
GeneOpn4Authority192223Mapping file id192223 NCBI fileEvidenceIEA
GeneOpn5Authority316259Mapping file id316259 NCBI fileEvidenceIEA
GeneOprd1Authority24613Mapping file id24613 NCBI fileEvidenceIEA
GeneOprk1Authority29335Mapping file id29335 NCBI fileEvidenceIEA
GeneOprl1Authority29256Mapping file id29256 NCBI fileEvidenceIEA
GeneOprm1Authority25601Mapping file id25601 NCBI fileEvidenceIEA
GeneOxgr1Authority290493Mapping file id290493 NCBI fileEvidenceIEA
GeneOxtAuthority25504Mapping file id25504 NCBI fileEvidenceIEA
GeneOxtrAuthority25342Mapping file id25342 NCBI fileEvidenceIEA
GeneP2ry1Authority25265Mapping file id25265 NCBI fileEvidenceIEA
GeneP2ry10Authority317219Mapping file id317219 NCBI fileEvidenceIEA
GeneP2ry12Authority64803Mapping file id64803 NCBI fileEvidenceIEA
GeneP2ry13Authority310444Mapping file id310444 NCBI fileEvidenceIEA
GeneP2ry14Authority171108Mapping file id171108 NCBI fileEvidenceIEA
GeneP2ry2Authority29597Mapping file id29597 NCBI fileEvidenceIEA
GeneP2ry4Authority63843Mapping file id63843 NCBI fileEvidenceIEA
GeneP2ry6Authority117264Mapping file id117264 NCBI fileEvidenceIEA
GenePak1Authority29431Mapping file id29431 NCBI fileEvidenceIEA
GenePcp2Authority304195Mapping file idENSRNOG00000000993 Ensembl fileEvidenceIEA
GenePde10aAuthority63885Mapping file id63885 NCBI fileEvidenceIEA
GenePde11aAuthority140928Mapping file id140928 NCBI fileEvidenceIEA
GenePde1aAuthority81529Mapping file idENSRNOG00000054212 Ensembl fileEvidenceIEA
GenePde1bAuthority29691Mapping file id29691 NCBI fileEvidenceIEA
GenePde1cAuthority81742Mapping file id81742 NCBI fileEvidenceIEA
GenePde2aAuthority81743Mapping file id81743 NCBI fileEvidenceIEA
GenePde3aAuthority50678Mapping file id50678 NCBI fileEvidenceIEA
GenePde3bAuthority29516Mapping file id29516 NCBI fileEvidenceIEA
GenePde4aAuthority25638Mapping file id25638 NCBI fileEvidenceIEA
GenePde4bAuthority24626Mapping file id24626 NCBI fileEvidenceIEA
GenePde4cAuthority290646Mapping file idENSRNOG00000019518 Ensembl fileEvidenceIEA
GenePde4dAuthority24627Mapping file id24627 NCBI fileEvidenceIEA
GenePde7aAuthority81744Mapping file idENSRNOG00000013048 Ensembl fileEvidenceIEA
GenePde7bAuthority140929Mapping file idENSRNOG00000013436 Ensembl fileEvidenceIEA
GenePde8aAuthority308776Mapping file id308776 NCBI fileEvidenceIEA
GenePde8bAuthority309962Mapping file id309962 NCBI fileEvidenceIEA
GenePdpk1Authority81745Mapping file id81745 NCBI fileEvidenceIEA
GenePdynAuthority29190Mapping file idENSRNOG00000026036 Ensembl fileEvidenceIEA
GenePenkAuthority29237Mapping file id29237 NCBI fileEvidenceIEA
GenePf4Authority360918Mapping file id360918 NCBI fileEvidenceIEA
GenePik3caAuthority170911Mapping file id170911 NCBI fileEvidenceIEA
GenePik3cgAuthority298947Mapping file id298947 NCBI fileEvidenceIEA
GenePik3r1Authority25513Mapping file id25513 NCBI fileEvidenceIEA
GenePik3r3Authority60664Mapping file id60664 NCBI fileEvidenceIEA
GenePik3r5Authority497931Mapping file id497931 NCBI fileEvidenceIEA
GenePik3r6Authority497932Mapping file id497932 NCBI fileEvidenceIEA
GenePla2g4aAuthority24653Mapping file idENSRNOG00000002657 Ensembl fileEvidenceIEA
GenePlcb1Authority24654Mapping file id24654 NCBI fileEvidenceIEA
GenePlcb2Authority85240Mapping file id85240 NCBI fileEvidenceIEA
GenePlcb3Authority29322Mapping file idENSRNOG00000021150 Ensembl fileEvidenceIEA
GenePlcb4Authority25031Mapping file id25031 NCBI fileEvidenceIEA
GenePlekhg2Authority292750Mapping file idENSRNOG00000030266 Ensembl fileEvidenceIEA
GenePlekhg5Authority310999Mapping file id310999 NCBI fileEvidenceIEA
GenePlxnb1Authority316009Mapping file id316009 NCBI fileEvidenceIEA
GenePmchAuthority24659Mapping file id24659 NCBI fileEvidenceIEA
GenePnocAuthority25516Mapping file id25516 NCBI fileEvidenceIEA
GenePomcAuthority24664Mapping file idENSRNOG00000012686 Ensembl fileEvidenceIEA
GenePpbpAuthority246358Mapping file id246358 NCBI fileEvidenceIEA
GenePpp1caAuthority24668Mapping file id24668 NCBI fileEvidenceIEA
GenePpp1r1bAuthority360616Mapping file id360616 NCBI fileEvidenceIEA
GenePpp2caAuthority24672Mapping file id24672 NCBI fileEvidenceIEA
GenePpp2cbAuthority24673Mapping file id24673 NCBI fileEvidenceIEA
GenePpp2r1aAuthority117281Mapping file id117281 NCBI fileEvidenceIEA
GenePpp2r1bAuthority315648Mapping file id315648 NCBI fileEvidenceIEA
GenePpp2r5dAuthority363193Mapping file id363193 NCBI fileEvidenceIEA
GenePpyAuthority24677Mapping file id24677 NCBI fileEvidenceIEA
GenePrex1Authority311647Mapping file id311647 NCBI fileEvidenceIEA
GenePrkacbAuthority293508Mapping file id293508 NCBI fileEvidenceIEA
GenePrkar1aAuthority25725Mapping file id25725 NCBI fileEvidenceIEA
GenePrkar1bAuthority25521Mapping file id25521 NCBI fileEvidenceIEA
GenePrkar2aAuthority29699Mapping file id29699 NCBI fileEvidenceIEA
GenePrkar2bAuthority24679Mapping file id24679 NCBI fileEvidenceIEA
GenePrkcaAuthority24680Mapping file id24680 NCBI fileEvidenceIEA
GenePrkcdAuthority170538Mapping file id170538 NCBI fileEvidenceIEA
GenePrkceAuthority29340Mapping file id29340 NCBI fileEvidenceIEA
GenePrkcgAuthority24681Mapping file id24681 NCBI fileEvidenceIEA
GenePrkchAuthority81749Mapping file id81749 NCBI fileEvidenceIEA
GenePrkcqAuthority85420Mapping file idENSRNOG00000019057 Ensembl fileEvidenceIEA
GeneProk1Authority192205Mapping file id192205 NCBI fileEvidenceIEA
GeneProk2Authority192206Mapping file id192206 NCBI fileEvidenceIEA
GeneProkr1Authority192648Mapping file id192648 NCBI fileEvidenceIEA
GeneProkr2Authority192649Mapping file id192649 NCBI fileEvidenceIEA
GenePsapAuthority25524Mapping file id25524 NCBI fileEvidenceIEA
GenePtafrAuthority58949Mapping file id58949 NCBI fileEvidenceIEA
GenePtgdr2Authority309212Mapping file id309212 NCBI fileEvidenceIEA
GenePtger1Authority25637Mapping file id25637 NCBI fileEvidenceIEA
GenePtger3Authority24929Mapping file id24929 NCBI fileEvidenceIEA
GenePtgfrAuthority25652Mapping file id25652 NCBI fileEvidenceIEA
GenePyyAuthority287730Mapping file id287730 NCBI fileEvidenceIEA
GeneQrfpAuthority379044Mapping file id379044 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.