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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Mitochondrial translation elongation

R-RNO-5389840 in Reactome release 97: under Mitochondrial translation, with 75 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-5389840 (human), R-MMU-5389840 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 75 genes in this rat pathway; showing 1 to 75, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneChchd1Authority361005Mapping file id361005 NCBI fileEvidenceIEA
GeneDap3Authority295238Mapping file id295238 NCBI fileEvidenceIEA
GeneEral1Authority363646Mapping file id363646 NCBI fileEvidenceIEA
GeneGadd45gip1Authority288916Mapping file id288916 NCBI fileEvidenceIEA
GeneGfm1Authority114017Mapping file id114017 NCBI fileEvidenceIEA
GeneKgd4Authority294696Mapping file idENSRNOG00000061213 Ensembl fileEvidenceIEA
GeneMrpl1Authority289491Mapping file idENSRNOG00000002070 Ensembl fileEvidenceIEA
GeneMrpl10Authority691075Mapping file idENSRNOG00000009567 Ensembl fileEvidenceIEA
GeneMrpl11Authority293666Mapping file id293666 NCBI fileEvidenceIEA
GeneMrpl12Authority303746Mapping file id303746 NCBI fileEvidenceIEA
GeneMrpl13Authority299938Mapping file id299938 NCBI fileEvidenceIEA
GeneMrpl14Authority301250Mapping file id301250 NCBI fileEvidenceIEA
GeneMrpl15Authority297799Mapping file id297799 NCBI fileEvidenceIEA
GeneMrpl16Authority293754Mapping file id293754 NCBI fileEvidenceIEA
GeneMrpl17Authority171061Mapping file id171061 NCBI fileEvidenceIEA
GeneMrpl18Authority292244Mapping file id292244 NCBI fileEvidenceIEA
GeneMrpl19Authority297372Mapping file id297372 NCBI fileEvidenceIEA
GeneMrpl2Authority301240Mapping file id301240 NCBI fileEvidenceIEA
GeneMrpl20Authority680747Mapping file id680747 NCBI fileEvidenceIEA
GeneMrpl21Authority309140Mapping file id309140 NCBI fileEvidenceIEA
GeneMrpl22Authority287302Mapping file id287302 NCBI fileEvidenceIEA
GeneMrpl23Authority64360Mapping file id64360 NCBI fileEvidenceIEA
GeneMrpl24Authority295224Mapping file id295224 NCBI fileEvidenceIEA
GeneMrpl27Authority287635Mapping file idENSRNOG00000003724 Ensembl fileEvidenceIEA
GeneMrpl28Authority497876Mapping file id497876 NCBI fileEvidenceIEA
GeneMrpl3Authority300974Mapping file idENSRNOG00000012650 Ensembl fileEvidenceIEA
GeneMrpl30Authority301352Mapping file id301352 NCBI fileEvidenceIEA
GeneMrpl33Authority100363539Mapping file id100363539 NCBI fileEvidenceIEA
GeneMrpl35Authority297334Mapping file idENSRNOG00000008546 Ensembl fileEvidenceIEA
GeneMrpl36Authority364656Mapping file id364656 NCBI fileEvidenceIEA
GeneMrpl37Authority56281Mapping file id56281 NCBI fileEvidenceIEA
GeneMrpl38Authority303685Mapping file id303685 NCBI fileEvidenceIEA
GeneMrpl39Authority684304Mapping file id684304 NCBI fileEvidenceIEA
GeneMrpl4Authority363023Mapping file id363023 NCBI fileEvidenceIEA
GeneMrpl40Authority287962Mapping file id287962 NCBI fileEvidenceIEA
GeneMrpl41Authority296551Mapping file id296551 NCBI fileEvidenceIEA
GeneMrpl42Authority299743Mapping file idENSRNOG00000042740 Ensembl fileEvidenceIEA
GeneMrpl43Authority309440Mapping file id309440 NCBI fileEvidenceIEA
GeneMrpl44Authority301552Mapping file id301552 NCBI fileEvidenceIEA
GeneMrpl45Authority287656Mapping file id287656 NCBI fileEvidenceIEA
GeneMrpl46Authority293054Mapping file id293054 NCBI fileEvidenceIEA
GeneMrpl47Authority294963Mapping file idENSRNOG00000011639 Ensembl fileEvidenceIEA
GeneMrpl48Authority293149Mapping file idENSRNOG00000018042 Ensembl fileEvidenceIEA
GeneMrpl49Authority309176Mapping file id309176 NCBI fileEvidenceIEA
GeneMrpl50Authority362517Mapping file idENSRNOG00000068816 Ensembl fileEvidenceIEA
GeneMrpl51Authority297601Mapping file id297601 NCBI fileEvidenceIEA
GeneMrpl54Authority299628Mapping file id299628 NCBI fileEvidenceIEA
GeneMrpl55Authority287356Mapping file idENSRNOG00000002943 Ensembl fileEvidenceIEA
GeneMrpl57Authority691814Mapping file idENSRNOG00000081514 Ensembl fileEvidenceIEA
GeneMrpl58Authority303673Mapping file idENSRNOG00000032780 Ensembl fileEvidenceIEA
GeneMrpl9Authority310653Mapping file id310653 NCBI fileEvidenceIEA
GeneMrps10Authority363187Mapping file idENSRNOG00000022609 Ensembl fileEvidenceIEA
GeneMrps12Authority292758Mapping file id292758 NCBI fileEvidenceIEA
GeneMrps14Authority289143Mapping file idENSRNOG00000079901 Ensembl fileEvidenceIEA
GeneMrps15Authority298517Mapping file id298517 NCBI fileEvidenceIEA
GeneMrps17Authority288621Mapping file idENSRNOG00000066020 Ensembl fileEvidenceIEA
GeneMrps18bAuthority294230Mapping file id294230 NCBI fileEvidenceIEA
GeneMrps18cAuthority289469Mapping file idENSRNOG00000085702 Ensembl fileEvidenceIEA
GeneMrps21Authority689432Mapping file id689432 NCBI fileEvidenceIEA
GeneMrps22Authority683519Mapping file id683519 NCBI fileEvidenceIEA
GeneMrps23Authority360594Mapping file id360594 NCBI fileEvidenceIEA
GeneMrps24Authority498406Mapping file id498406 NCBI fileEvidenceIEA
GeneMrps25Authority297459Mapping file id297459 NCBI fileEvidenceIEA
GeneMrps26Authority362216Mapping file id362216 NCBI fileEvidenceIEA
GeneMrps27Authority361883Mapping file id361883 NCBI fileEvidenceIEA
GeneMrps30Authority294767Mapping file id294767 NCBI fileEvidenceIEA
GeneMrps31Authority290850Mapping file id290850 NCBI fileEvidenceIEA
GeneMrps34Authority287126Mapping file idENSRNOG00000015300 Ensembl fileEvidenceIEA
GeneMrps35Authority297727Mapping file idENSRNOG00000001842 Ensembl fileEvidenceIEA
GeneMrps5Authority296134Mapping file id296134 NCBI fileEvidenceIEA
GeneMrps6Authority100360017Mapping file idENSRNOG00000059381 Ensembl fileEvidenceIEA
GeneMrps7Authority113958Mapping file id113958 NCBI fileEvidenceIEA
GeneMrps9Authority301371Mapping file id301371 NCBI fileEvidenceIEA
GeneOxa1lAuthority691393Mapping file idENSRNOG00000009713 Ensembl fileEvidenceIEA
GenePtcd3Authority500199Mapping file id500199 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.