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Pathway Human Homo sapiens

Disease

R-HSA-1643685 in Reactome release 97: a top-level pathway, with 2,550 genes placed in it by the mapping files and 12 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id; neither of the other two lists holds it. Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 2,550 genes in this human pathway; showing 1,701 to 1,800, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 18 of 26
GeneRPS7AuthorityHGNC:10440Mapping file id6201 NCBI fileEvidenceTAS
GeneRPS8AuthorityHGNC:10441Mapping file id6202 NCBI fileEvidenceTAS
GeneRPS9AuthorityHGNC:10442Mapping file id6203 NCBI fileEvidenceTAS
GeneRPSAAuthorityHGNC:6502Mapping file id3921 NCBI fileEvidenceTAS
GeneRPTORAuthorityHGNC:30287Mapping file id57521 NCBI fileEvidenceTAS
GeneRRBP1AuthorityHGNC:10448Mapping file id6238 NCBI fileEvidenceTAS
GeneRTF1AuthorityHGNC:28996Mapping file id23168 NCBI fileEvidenceTAS
GeneRTN3AuthorityHGNC:10469Mapping file id10313 NCBI fileEvidenceTAS
GeneRUNX1AuthorityHGNC:10471Mapping file id861 NCBI fileEvidenceTAS
GeneS100A1AuthorityHGNC:10486Mapping file id6271 NCBI fileEvidenceTAS
GeneS100A8AuthorityHGNC:10498Mapping file id6279 NCBI fileEvidenceTAS
GeneS100A9AuthorityHGNC:10499Mapping file id6280 NCBI fileEvidenceTAS
GeneS1PR1AuthorityHGNC:3165Mapping file id1901 NCBI fileEvidenceTAS
GeneSAP18AuthorityHGNC:10530Mapping file id10284 NCBI fileEvidenceTAS
GeneSAP30AuthorityHGNC:10532Mapping file id8819 NCBI fileEvidenceTAS
GeneSAP30LAuthorityHGNC:25663Mapping file id79685 NCBI fileEvidenceTAS
GeneSAR1BAuthorityHGNC:10535Mapping file id51128 NCBI fileEvidenceTAS
GeneSBSPONAuthorityHGNC:30362Mapping file id157869 NCBI fileEvidenceTAS
GeneSCAPAuthorityHGNC:30634Mapping file id22937 NCBI fileEvidenceTAS
GeneSDC1AuthorityHGNC:10658Mapping file id6382 NCBI fileEvidenceIEA, TAS
GeneSDC2AuthorityHGNC:10659Mapping file id6383 NCBI fileEvidenceIEA, TAS
GeneSDC3AuthorityHGNC:10660Mapping file id9672 NCBI fileEvidenceIEA, TAS
GeneSDC4AuthorityHGNC:10661Mapping file id6385 NCBI fileEvidenceIEA, TAS
GeneSEC11AAuthorityHGNC:17718Mapping file id23478 NCBI fileEvidenceTAS
GeneSEC11CAuthorityHGNC:23400Mapping file id90701 NCBI fileEvidenceTAS
GeneSEC13AuthorityHGNC:10697Mapping file id6396 NCBI fileEvidenceIEA, TAS
GeneSEC23AAuthorityHGNC:10701Mapping file id10484 NCBI fileEvidenceTAS
GeneSEC24AAuthorityHGNC:10703Mapping file id10802 NCBI fileEvidenceTAS
GeneSEC24BAuthorityHGNC:10704Mapping file id10427 NCBI fileEvidenceTAS
GeneSEC24CAuthorityHGNC:10705Mapping file id9632 NCBI fileEvidenceTAS
GeneSEC24DAuthorityHGNC:10706Mapping file id9871 NCBI fileEvidenceTAS
GeneSEC31AAuthorityHGNC:17052Mapping file id22872 NCBI fileEvidenceTAS
GeneSEH1LAuthorityHGNC:30379Mapping file id81929 NCBI fileEvidenceIEA, TAS
GeneSEL1LAuthorityHGNC:10717Mapping file id6400 NCBI fileEvidenceTAS
GeneSEM1AuthorityHGNC:10845Mapping file id7979 NCBI fileEvidenceTAS
GeneSEMA5AAuthorityHGNC:10736Mapping file id9037 NCBI fileEvidenceTAS
GeneSEMA5BAuthorityHGNC:10737Mapping file id54437 NCBI fileEvidenceTAS
GeneSERPINE1AuthorityHGNC:8583Mapping file idENSG00000106366 Ensembl fileEvidenceTAS
GeneSERPING1AuthorityHGNC:1228Mapping file id710 NCBI fileEvidenceTAS
GeneSF3A1AuthorityHGNC:10765Mapping file id10291 NCBI fileEvidenceTAS
GeneSF3A2AuthorityHGNC:10766Mapping file id8175 NCBI fileEvidenceTAS
GeneSF3A3AuthorityHGNC:10767Mapping file id10946 NCBI fileEvidenceTAS
GeneSF3B1AuthorityHGNC:10768Mapping file id23451 NCBI fileEvidenceTAS
GeneSF3B2AuthorityHGNC:10769Mapping file id10992 NCBI fileEvidenceTAS
GeneSF3B3AuthorityHGNC:10770Mapping file id23450 NCBI fileEvidenceTAS
GeneSF3B4AuthorityHGNC:10771Mapping file id10262 NCBI fileEvidenceTAS
GeneSF3B5AuthorityHGNC:21083Mapping file id83443 NCBI fileEvidenceTAS
GeneSF3B6AuthorityHGNC:30096Mapping file id51639 NCBI fileEvidenceTAS
GeneSFNAuthorityHGNC:10773Mapping file id2810 NCBI fileEvidenceTAS
GeneSFPQAuthorityHGNC:10774Mapping file id6421 NCBI fileEvidenceTAS
GeneSFTA3AuthorityHGNC:18387Mapping file idENSG00000229415 Ensembl fileEvidenceTAS
GeneSFTPA1AuthorityHGNC:10798Mapping file id653509 NCBI fileEvidenceTAS
GeneSFTPA2AuthorityHGNC:10799Mapping file id729238 NCBI fileEvidenceTAS
GeneSFTPBAuthorityHGNC:10801Mapping file id6439 NCBI fileEvidenceTAS
GeneSFTPCAuthorityHGNC:10802Mapping file id6440 NCBI fileEvidenceTAS
GeneSFTPDAuthorityHGNC:10803Mapping file id6441 NCBI fileEvidenceTAS
GeneSGSHAuthorityHGNC:10818Mapping file id6448 NCBI fileEvidenceTAS
GeneSH3GL1AuthorityHGNC:10830Mapping file id6455 NCBI fileEvidenceIEA
GeneSH3GL2AuthorityHGNC:10831Mapping file id6456 NCBI fileEvidenceIEA
GeneSH3GL3AuthorityHGNC:10832Mapping file id6457 NCBI fileEvidenceIEA
GeneSH3KBP1AuthorityHGNC:13867Mapping file id30011 NCBI fileEvidenceIEA, TAS
GeneSHC1AuthorityHGNC:10840Mapping file id6464 NCBI fileEvidenceTAS
GeneSHHAuthorityHGNC:10848Mapping file id6469 NCBI fileEvidenceTAS
GeneSHOC2AuthorityHGNC:15454Mapping file id8036 NCBI fileEvidenceTAS
GeneSIAuthorityHGNC:10856Mapping file id6476 NCBI fileEvidenceIEA, TAS
GeneSIGMAR1AuthorityHGNC:8157Mapping file id10280 NCBI fileEvidenceTAS
GeneSIKE1AuthorityHGNC:26119Mapping file id80143 NCBI fileEvidenceTAS
GeneSIN3AAuthorityHGNC:19353Mapping file id25942 NCBI fileEvidenceTAS
GeneSKIC8AuthorityHGNC:30300Mapping file id80349 NCBI fileEvidenceTAS
GeneSKP1AuthorityHGNC:10899Mapping file id6500 NCBI fileEvidenceTAS
GeneSKP2AuthorityHGNC:10901Mapping file id6502 NCBI fileEvidenceTAS
GeneSLC11A2AuthorityHGNC:10908Mapping file id4891 NCBI fileEvidenceTAS
GeneSLC12A1AuthorityHGNC:10910Mapping file id6557 NCBI fileEvidenceTAS
GeneSLC12A3AuthorityHGNC:10912Mapping file id6559 NCBI fileEvidenceTAS
GeneSLC12A6AuthorityHGNC:10914Mapping file id9990 NCBI fileEvidenceTAS
GeneSLC16A1AuthorityHGNC:10922Mapping file id6566 NCBI fileEvidenceTAS
GeneSLC17A5AuthorityHGNC:10933Mapping file id26503 NCBI fileEvidenceTAS
GeneSLC17A8AuthorityHGNC:20151Mapping file id246213 NCBI fileEvidenceTAS
GeneSLC1A1AuthorityHGNC:10939Mapping file id6505 NCBI fileEvidenceTAS
GeneSLC1A3AuthorityHGNC:10941Mapping file id6507 NCBI fileEvidenceTAS
GeneSLC20A2AuthorityHGNC:10947Mapping file id6575 NCBI fileEvidenceTAS
GeneSLC22A12AuthorityHGNC:17989Mapping file id116085 NCBI fileEvidenceTAS
GeneSLC22A5AuthorityHGNC:10969Mapping file id6584 NCBI fileEvidenceTAS
GeneSLC24A1AuthorityHGNC:10975Mapping file id9187 NCBI fileEvidenceTAS
GeneSLC24A4AuthorityHGNC:10978Mapping file id123041 NCBI fileEvidenceTAS
GeneSLC24A5AuthorityHGNC:20611Mapping file id283652 NCBI fileEvidenceTAS
GeneSLC25A15AuthorityHGNC:10985Mapping file id10166 NCBI fileEvidenceTAS
GeneSLC25A4AuthorityHGNC:10990Mapping file id291 NCBI fileEvidenceTAS
GeneSLC25A5AuthorityHGNC:10991Mapping file id292 NCBI fileEvidenceTAS
GeneSLC25A6AuthorityHGNC:10992Mapping file id293 NCBI fileEvidenceTAS
GeneSLC26A2AuthorityHGNC:10994Mapping file id1836 NCBI fileEvidenceTAS
GeneSLC26A3AuthorityHGNC:3018Mapping file id1811 NCBI fileEvidenceTAS
GeneSLC26A4AuthorityHGNC:8818Mapping file id5172 NCBI fileEvidenceTAS
GeneSLC27A4AuthorityHGNC:10998Mapping file id10999 NCBI fileEvidenceTAS
GeneSLC29A3AuthorityHGNC:23096Mapping file id55315 NCBI fileEvidenceTAS
GeneSLC2A1AuthorityHGNC:11005Mapping file id6513 NCBI fileEvidenceTAS
GeneSLC2A10AuthorityHGNC:13444Mapping file id81031 NCBI fileEvidenceTAS
GeneSLC2A2AuthorityHGNC:11006Mapping file id6514 NCBI fileEvidenceTAS
GeneSLC2A9AuthorityHGNC:13446Mapping file id56606 NCBI fileEvidenceTAS
GeneSLC33A1AuthorityHGNC:95Mapping file id9197 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.