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Pathway Human Homo sapiens

Metabolism of lipids

R-HSA-556833 in Reactome release 97: under Metabolism, with 758 genes placed in it by the mapping files and 10 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-556833 (mouse), R-RNO-556833 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 758 genes in this human pathway; showing 601 to 700, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 7 of 8
GenePPARGC1BAuthorityHGNC:30022Mapping file id133522 NCBI fileEvidenceTAS
GenePPM1LAuthorityHGNC:16381Mapping file id151742 NCBI fileEvidenceTAS
GenePPP1CAAuthorityHGNC:9281Mapping file id5499 NCBI fileEvidenceIEA
GenePPP1CBAuthorityHGNC:9282Mapping file id5500 NCBI fileEvidenceIEA
GenePPP1CCAuthorityHGNC:9283Mapping file id5501 NCBI fileEvidenceIEA
GenePPT1AuthorityHGNC:9325Mapping file id5538 NCBI fileEvidenceTAS
GenePPT2AuthorityHGNC:9326Mapping file id9374 NCBI fileEvidenceTAS
GenePRKAA2AuthorityHGNC:9377Mapping file id5563 NCBI fileEvidenceTAS
GenePRKAB2AuthorityHGNC:9379Mapping file id5565 NCBI fileEvidenceTAS
GenePRKACAAuthorityHGNC:9380Mapping file id5566 NCBI fileEvidenceIEA
GenePRKACBAuthorityHGNC:9381Mapping file id5567 NCBI fileEvidenceIEA
GenePRKACGAuthorityHGNC:9382Mapping file id5568 NCBI fileEvidenceIEA
GenePRKAG2AuthorityHGNC:9386Mapping file id51422 NCBI fileEvidenceTAS
GenePRKD1AuthorityHGNC:9407Mapping file id5587 NCBI fileEvidenceTAS
GenePRKD2AuthorityHGNC:17293Mapping file id25865 NCBI fileEvidenceTAS
GenePRKD3AuthorityHGNC:9408Mapping file id23683 NCBI fileEvidenceTAS
GenePRXL2BAuthorityHGNC:28390Mapping file id127281 NCBI fileEvidenceIEA
GenePSAPAuthorityHGNC:9498Mapping file id5660 NCBI fileEvidenceTAS
GenePTDSS1AuthorityHGNC:9587Mapping file id9791 NCBI fileEvidenceTAS
GenePTDSS2AuthorityHGNC:15463Mapping file id81490 NCBI fileEvidenceTAS
GenePTENAuthorityHGNC:9588Mapping file id5728 NCBI fileEvidenceTAS
GenePTGDSAuthorityHGNC:9592Mapping file id5730 NCBI fileEvidenceTAS
GenePTGESAuthorityHGNC:9599Mapping file id9536 NCBI fileEvidenceTAS
GenePTGES2AuthorityHGNC:17822Mapping file id80142 NCBI fileEvidenceTAS
GenePTGES3AuthorityHGNC:16049Mapping file id10728 NCBI fileEvidenceTAS
GenePTGISAuthorityHGNC:9603Mapping file id5740 NCBI fileEvidenceTAS
GenePTGR1AuthorityHGNC:18429Mapping file id22949 NCBI fileEvidenceIEA
GenePTGR2AuthorityHGNC:20149Mapping file id145482 NCBI fileEvidenceIEA
GenePTGS1AuthorityHGNC:9604Mapping file id5742 NCBI fileEvidenceTAS
GenePTGS2AuthorityHGNC:9605Mapping file id5743 NCBI fileEvidenceTAS
GenePTPMT1AuthorityHGNC:26965Mapping file id114971 NCBI fileEvidenceIEA
GenePTPN13AuthorityHGNC:9646Mapping file id5783 NCBI fileEvidenceTAS
GeneRAB14AuthorityHGNC:16524Mapping file id51552 NCBI fileEvidenceTAS
GeneRAB4AAuthorityHGNC:9781Mapping file id5867 NCBI fileEvidenceTAS
GeneRAB5AAuthorityHGNC:9783Mapping file id5868 NCBI fileEvidenceTAS
GeneRANAuthorityHGNC:9846Mapping file id5901 NCBI fileEvidenceTAS
GeneRGL1AuthorityHGNC:30281Mapping file id23179 NCBI fileEvidenceTAS
GeneRORAAuthorityHGNC:10258Mapping file id6095 NCBI fileEvidenceIEA
GeneRUFY1AuthorityHGNC:19760Mapping file id80230 NCBI fileEvidenceTAS
GeneRXRAAuthorityHGNC:10477Mapping file id6256 NCBI fileEvidenceIEA, TAS
GeneRXRBAuthorityHGNC:10478Mapping file id6257 NCBI fileEvidenceTAS
GeneSACM1LAuthorityHGNC:17059Mapping file id22908 NCBI fileEvidenceTAS
GeneSAMD8AuthorityHGNC:26320Mapping file id142891 NCBI fileEvidenceTAS
GeneSAR1BAuthorityHGNC:10535Mapping file id51128 NCBI fileEvidenceIEA
GeneSBF1AuthorityHGNC:10542Mapping file id6305 NCBI fileEvidenceTAS
GeneSBF2AuthorityHGNC:2135Mapping file id81846 NCBI fileEvidenceIEA
GeneSC5DAuthorityHGNC:10547Mapping file id6309 NCBI fileEvidenceTAS
GeneSCAPAuthorityHGNC:30634Mapping file id22937 NCBI fileEvidenceIEA, TAS
GeneSCDAuthorityHGNC:10571Mapping file id6319 NCBI fileEvidenceTAS
GeneSCD5AuthorityHGNC:21088Mapping file id79966 NCBI fileEvidenceTAS
GeneSCP2AuthorityHGNC:10606Mapping file id6342 NCBI fileEvidenceTAS
GeneSEC23AAuthorityHGNC:10701Mapping file id10484 NCBI fileEvidenceIEA
GeneSEC24AAuthorityHGNC:10703Mapping file id10802 NCBI fileEvidenceIEA
GeneSEC24BAuthorityHGNC:10704Mapping file id10427 NCBI fileEvidenceIEA
GeneSEC24CAuthorityHGNC:10705Mapping file id9632 NCBI fileEvidenceIEA
GeneSEC24DAuthorityHGNC:10706Mapping file id9871 NCBI fileEvidenceIEA
GeneSELENOIAuthorityHGNC:29361Mapping file id85465 NCBI fileEvidenceTAS
GeneSERPINA6AuthorityHGNC:1540Mapping file id866 NCBI fileEvidenceTAS
GeneSGMS1AuthorityHGNC:29799Mapping file id259230 NCBI fileEvidenceTAS
GeneSGMS2AuthorityHGNC:28395Mapping file id166929 NCBI fileEvidenceTAS
GeneSGPL1AuthorityHGNC:10817Mapping file id8879 NCBI fileEvidenceTAS
GeneSGPP1AuthorityHGNC:17720Mapping file id81537 NCBI fileEvidenceTAS
GeneSGPP2AuthorityHGNC:19953Mapping file id130367 NCBI fileEvidenceTAS
GeneSIN3AAuthorityHGNC:19353Mapping file id25942 NCBI fileEvidenceTAS
GeneSIN3BAuthorityHGNC:19354Mapping file id23309 NCBI fileEvidenceTAS
GeneSLC10A1AuthorityHGNC:10905Mapping file id6554 NCBI fileEvidenceTAS
GeneSLC10A2AuthorityHGNC:10906Mapping file id6555 NCBI fileEvidenceTAS
GeneSLC22A5AuthorityHGNC:10969Mapping file id6584 NCBI fileEvidenceTAS
GeneSLC25A17AuthorityHGNC:10987Mapping file id10478 NCBI fileEvidenceTAS
GeneSLC25A20AuthorityHGNC:1421Mapping file id788 NCBI fileEvidenceTAS
GeneSLC27A1AuthorityHGNC:10995Mapping file id376497 NCBI fileEvidenceIEA, TAS
GeneSLC27A2AuthorityHGNC:10996Mapping file id11001 NCBI fileEvidenceTAS
GeneSLC27A3AuthorityHGNC:10997Mapping file id11000 NCBI fileEvidenceIEA
GeneSLC27A5AuthorityHGNC:10999Mapping file id10998 NCBI fileEvidenceTAS
GeneSLC44A1AuthorityHGNC:18798Mapping file id23446 NCBI fileEvidenceTAS
GeneSLC44A2AuthorityHGNC:17292Mapping file id57153 NCBI fileEvidenceTAS
GeneSLC44A3AuthorityHGNC:28689Mapping file id126969 NCBI fileEvidenceTAS
GeneSLC44A4AuthorityHGNC:13941Mapping file id80736 NCBI fileEvidenceTAS
GeneSLC44A5AuthorityHGNC:28524Mapping file id204962 NCBI fileEvidenceTAS
GeneSLC51AAuthorityHGNC:29955Mapping file id200931 NCBI fileEvidenceTAS
GeneSLC51BAuthorityHGNC:29956Mapping file id123264 NCBI fileEvidenceTAS
GeneSLCO1A2AuthorityHGNC:10956Mapping file id6579 NCBI fileEvidenceTAS
GeneSLCO1B1AuthorityHGNC:10959Mapping file id10599 NCBI fileEvidenceTAS
GeneSLCO1B3AuthorityHGNC:10961Mapping file id28234 NCBI fileEvidenceTAS
GeneSMARCD3AuthorityHGNC:11108Mapping file id6604 NCBI fileEvidenceIEA, TAS
GeneSMPD1AuthorityHGNC:11120Mapping file id6609 NCBI fileEvidenceTAS
GeneSMPD2AuthorityHGNC:11121Mapping file id6610 NCBI fileEvidenceTAS
GeneSMPD3AuthorityHGNC:14240Mapping file id55512 NCBI fileEvidenceTAS
GeneSMPD4AuthorityHGNC:32949Mapping file id55627 NCBI fileEvidenceTAS
GeneSP1AuthorityHGNC:11205Mapping file id6667 NCBI fileEvidenceTAS
GeneSPHK1AuthorityHGNC:11240Mapping file id8877 NCBI fileEvidenceTAS
GeneSPHK2AuthorityHGNC:18859Mapping file id56848 NCBI fileEvidenceTAS
GeneSPNS2AuthorityHGNC:26992Mapping file id124976 NCBI fileEvidenceTAS
GeneSPTLC1AuthorityHGNC:11277Mapping file id10558 NCBI fileEvidenceTAS
GeneSPTLC2AuthorityHGNC:11278Mapping file id9517 NCBI fileEvidenceTAS
GeneSPTLC3AuthorityHGNC:16253Mapping file id55304 NCBI fileEvidenceTAS
GeneSPTSSAAuthorityHGNC:20361Mapping file id171546 NCBI fileEvidenceTAS
GeneSPTSSBAuthorityHGNC:24045Mapping file id165679 NCBI fileEvidenceTAS
GeneSQLEAuthorityHGNC:11279Mapping file id6713 NCBI fileEvidenceTAS
GeneSRD5A1AuthorityHGNC:11284Mapping file id6715 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.