Pathway Human Homo sapiens
Metabolism of lipids
R-HSA-556833 in Reactome release 97: under Metabolism, with 758 genes placed in it by the mapping files and 10 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-556833 (mouse), R-RNO-556833 (rat). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this human pathway
The mapping files place 758 genes in this human pathway; showing 601 to 700, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GenePPARGC1B | AuthorityHGNC:30022 | Mapping file id133522 NCBI file | EvidenceTAS |
| GenePPM1L | AuthorityHGNC:16381 | Mapping file id151742 NCBI file | EvidenceTAS |
| GenePPP1CA | AuthorityHGNC:9281 | Mapping file id5499 NCBI file | EvidenceIEA |
| GenePPP1CB | AuthorityHGNC:9282 | Mapping file id5500 NCBI file | EvidenceIEA |
| GenePPP1CC | AuthorityHGNC:9283 | Mapping file id5501 NCBI file | EvidenceIEA |
| GenePPT1 | AuthorityHGNC:9325 | Mapping file id5538 NCBI file | EvidenceTAS |
| GenePPT2 | AuthorityHGNC:9326 | Mapping file id9374 NCBI file | EvidenceTAS |
| GenePRKAA2 | AuthorityHGNC:9377 | Mapping file id5563 NCBI file | EvidenceTAS |
| GenePRKAB2 | AuthorityHGNC:9379 | Mapping file id5565 NCBI file | EvidenceTAS |
| GenePRKACA | AuthorityHGNC:9380 | Mapping file id5566 NCBI file | EvidenceIEA |
| GenePRKACB | AuthorityHGNC:9381 | Mapping file id5567 NCBI file | EvidenceIEA |
| GenePRKACG | AuthorityHGNC:9382 | Mapping file id5568 NCBI file | EvidenceIEA |
| GenePRKAG2 | AuthorityHGNC:9386 | Mapping file id51422 NCBI file | EvidenceTAS |
| GenePRKD1 | AuthorityHGNC:9407 | Mapping file id5587 NCBI file | EvidenceTAS |
| GenePRKD2 | AuthorityHGNC:17293 | Mapping file id25865 NCBI file | EvidenceTAS |
| GenePRKD3 | AuthorityHGNC:9408 | Mapping file id23683 NCBI file | EvidenceTAS |
| GenePRXL2B | AuthorityHGNC:28390 | Mapping file id127281 NCBI file | EvidenceIEA |
| GenePSAP | AuthorityHGNC:9498 | Mapping file id5660 NCBI file | EvidenceTAS |
| GenePTDSS1 | AuthorityHGNC:9587 | Mapping file id9791 NCBI file | EvidenceTAS |
| GenePTDSS2 | AuthorityHGNC:15463 | Mapping file id81490 NCBI file | EvidenceTAS |
| GenePTEN | AuthorityHGNC:9588 | Mapping file id5728 NCBI file | EvidenceTAS |
| GenePTGDS | AuthorityHGNC:9592 | Mapping file id5730 NCBI file | EvidenceTAS |
| GenePTGES | AuthorityHGNC:9599 | Mapping file id9536 NCBI file | EvidenceTAS |
| GenePTGES2 | AuthorityHGNC:17822 | Mapping file id80142 NCBI file | EvidenceTAS |
| GenePTGES3 | AuthorityHGNC:16049 | Mapping file id10728 NCBI file | EvidenceTAS |
| GenePTGIS | AuthorityHGNC:9603 | Mapping file id5740 NCBI file | EvidenceTAS |
| GenePTGR1 | AuthorityHGNC:18429 | Mapping file id22949 NCBI file | EvidenceIEA |
| GenePTGR2 | AuthorityHGNC:20149 | Mapping file id145482 NCBI file | EvidenceIEA |
| GenePTGS1 | AuthorityHGNC:9604 | Mapping file id5742 NCBI file | EvidenceTAS |
| GenePTGS2 | AuthorityHGNC:9605 | Mapping file id5743 NCBI file | EvidenceTAS |
| GenePTPMT1 | AuthorityHGNC:26965 | Mapping file id114971 NCBI file | EvidenceIEA |
| GenePTPN13 | AuthorityHGNC:9646 | Mapping file id5783 NCBI file | EvidenceTAS |
| GeneRAB14 | AuthorityHGNC:16524 | Mapping file id51552 NCBI file | EvidenceTAS |
| GeneRAB4A | AuthorityHGNC:9781 | Mapping file id5867 NCBI file | EvidenceTAS |
| GeneRAB5A | AuthorityHGNC:9783 | Mapping file id5868 NCBI file | EvidenceTAS |
| GeneRAN | AuthorityHGNC:9846 | Mapping file id5901 NCBI file | EvidenceTAS |
| GeneRGL1 | AuthorityHGNC:30281 | Mapping file id23179 NCBI file | EvidenceTAS |
| GeneRORA | AuthorityHGNC:10258 | Mapping file id6095 NCBI file | EvidenceIEA |
| GeneRUFY1 | AuthorityHGNC:19760 | Mapping file id80230 NCBI file | EvidenceTAS |
| GeneRXRA | AuthorityHGNC:10477 | Mapping file id6256 NCBI file | EvidenceIEA, TAS |
| GeneRXRB | AuthorityHGNC:10478 | Mapping file id6257 NCBI file | EvidenceTAS |
| GeneSACM1L | AuthorityHGNC:17059 | Mapping file id22908 NCBI file | EvidenceTAS |
| GeneSAMD8 | AuthorityHGNC:26320 | Mapping file id142891 NCBI file | EvidenceTAS |
| GeneSAR1B | AuthorityHGNC:10535 | Mapping file id51128 NCBI file | EvidenceIEA |
| GeneSBF1 | AuthorityHGNC:10542 | Mapping file id6305 NCBI file | EvidenceTAS |
| GeneSBF2 | AuthorityHGNC:2135 | Mapping file id81846 NCBI file | EvidenceIEA |
| GeneSC5D | AuthorityHGNC:10547 | Mapping file id6309 NCBI file | EvidenceTAS |
| GeneSCAP | AuthorityHGNC:30634 | Mapping file id22937 NCBI file | EvidenceIEA, TAS |
| GeneSCD | AuthorityHGNC:10571 | Mapping file id6319 NCBI file | EvidenceTAS |
| GeneSCD5 | AuthorityHGNC:21088 | Mapping file id79966 NCBI file | EvidenceTAS |
| GeneSCP2 | AuthorityHGNC:10606 | Mapping file id6342 NCBI file | EvidenceTAS |
| GeneSEC23A | AuthorityHGNC:10701 | Mapping file id10484 NCBI file | EvidenceIEA |
| GeneSEC24A | AuthorityHGNC:10703 | Mapping file id10802 NCBI file | EvidenceIEA |
| GeneSEC24B | AuthorityHGNC:10704 | Mapping file id10427 NCBI file | EvidenceIEA |
| GeneSEC24C | AuthorityHGNC:10705 | Mapping file id9632 NCBI file | EvidenceIEA |
| GeneSEC24D | AuthorityHGNC:10706 | Mapping file id9871 NCBI file | EvidenceIEA |
| GeneSELENOI | AuthorityHGNC:29361 | Mapping file id85465 NCBI file | EvidenceTAS |
| GeneSERPINA6 | AuthorityHGNC:1540 | Mapping file id866 NCBI file | EvidenceTAS |
| GeneSGMS1 | AuthorityHGNC:29799 | Mapping file id259230 NCBI file | EvidenceTAS |
| GeneSGMS2 | AuthorityHGNC:28395 | Mapping file id166929 NCBI file | EvidenceTAS |
| GeneSGPL1 | AuthorityHGNC:10817 | Mapping file id8879 NCBI file | EvidenceTAS |
| GeneSGPP1 | AuthorityHGNC:17720 | Mapping file id81537 NCBI file | EvidenceTAS |
| GeneSGPP2 | AuthorityHGNC:19953 | Mapping file id130367 NCBI file | EvidenceTAS |
| GeneSIN3A | AuthorityHGNC:19353 | Mapping file id25942 NCBI file | EvidenceTAS |
| GeneSIN3B | AuthorityHGNC:19354 | Mapping file id23309 NCBI file | EvidenceTAS |
| GeneSLC10A1 | AuthorityHGNC:10905 | Mapping file id6554 NCBI file | EvidenceTAS |
| GeneSLC10A2 | AuthorityHGNC:10906 | Mapping file id6555 NCBI file | EvidenceTAS |
| GeneSLC22A5 | AuthorityHGNC:10969 | Mapping file id6584 NCBI file | EvidenceTAS |
| GeneSLC25A17 | AuthorityHGNC:10987 | Mapping file id10478 NCBI file | EvidenceTAS |
| GeneSLC25A20 | AuthorityHGNC:1421 | Mapping file id788 NCBI file | EvidenceTAS |
| GeneSLC27A1 | AuthorityHGNC:10995 | Mapping file id376497 NCBI file | EvidenceIEA, TAS |
| GeneSLC27A2 | AuthorityHGNC:10996 | Mapping file id11001 NCBI file | EvidenceTAS |
| GeneSLC27A3 | AuthorityHGNC:10997 | Mapping file id11000 NCBI file | EvidenceIEA |
| GeneSLC27A5 | AuthorityHGNC:10999 | Mapping file id10998 NCBI file | EvidenceTAS |
| GeneSLC44A1 | AuthorityHGNC:18798 | Mapping file id23446 NCBI file | EvidenceTAS |
| GeneSLC44A2 | AuthorityHGNC:17292 | Mapping file id57153 NCBI file | EvidenceTAS |
| GeneSLC44A3 | AuthorityHGNC:28689 | Mapping file id126969 NCBI file | EvidenceTAS |
| GeneSLC44A4 | AuthorityHGNC:13941 | Mapping file id80736 NCBI file | EvidenceTAS |
| GeneSLC44A5 | AuthorityHGNC:28524 | Mapping file id204962 NCBI file | EvidenceTAS |
| GeneSLC51A | AuthorityHGNC:29955 | Mapping file id200931 NCBI file | EvidenceTAS |
| GeneSLC51B | AuthorityHGNC:29956 | Mapping file id123264 NCBI file | EvidenceTAS |
| GeneSLCO1A2 | AuthorityHGNC:10956 | Mapping file id6579 NCBI file | EvidenceTAS |
| GeneSLCO1B1 | AuthorityHGNC:10959 | Mapping file id10599 NCBI file | EvidenceTAS |
| GeneSLCO1B3 | AuthorityHGNC:10961 | Mapping file id28234 NCBI file | EvidenceTAS |
| GeneSMARCD3 | AuthorityHGNC:11108 | Mapping file id6604 NCBI file | EvidenceIEA, TAS |
| GeneSMPD1 | AuthorityHGNC:11120 | Mapping file id6609 NCBI file | EvidenceTAS |
| GeneSMPD2 | AuthorityHGNC:11121 | Mapping file id6610 NCBI file | EvidenceTAS |
| GeneSMPD3 | AuthorityHGNC:14240 | Mapping file id55512 NCBI file | EvidenceTAS |
| GeneSMPD4 | AuthorityHGNC:32949 | Mapping file id55627 NCBI file | EvidenceTAS |
| GeneSP1 | AuthorityHGNC:11205 | Mapping file id6667 NCBI file | EvidenceTAS |
| GeneSPHK1 | AuthorityHGNC:11240 | Mapping file id8877 NCBI file | EvidenceTAS |
| GeneSPHK2 | AuthorityHGNC:18859 | Mapping file id56848 NCBI file | EvidenceTAS |
| GeneSPNS2 | AuthorityHGNC:26992 | Mapping file id124976 NCBI file | EvidenceTAS |
| GeneSPTLC1 | AuthorityHGNC:11277 | Mapping file id10558 NCBI file | EvidenceTAS |
| GeneSPTLC2 | AuthorityHGNC:11278 | Mapping file id9517 NCBI file | EvidenceTAS |
| GeneSPTLC3 | AuthorityHGNC:16253 | Mapping file id55304 NCBI file | EvidenceTAS |
| GeneSPTSSA | AuthorityHGNC:20361 | Mapping file id171546 NCBI file | EvidenceTAS |
| GeneSPTSSB | AuthorityHGNC:24045 | Mapping file id165679 NCBI file | EvidenceTAS |
| GeneSQLE | AuthorityHGNC:11279 | Mapping file id6713 NCBI file | EvidenceTAS |
| GeneSRD5A1 | AuthorityHGNC:11284 | Mapping file id6715 NCBI file | EvidenceTAS |
Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.
- Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Children
- Biosynthesis of specialized proresolving mediators (SPMs)R-HSA-901867819 genes
- Fatty acid metabolismR-HSA-8978868175 genes
- Ketone body metabolismR-HSA-7418210 genes
- Lipid particle organizationR-HSA-89645726 genes
- Metabolism of steroidsR-HSA-8957322155 genes
- Phospholipid metabolismR-HSA-1483257212 genes
- Regulation of lipid metabolism by PPARalphaR-HSA-400206119 genes
- Sphingolipid metabolismR-HSA-428157107 genes
- Triglyceride metabolismR-HSA-897922738 genes
- Wax and plasmalogen biosynthesisR-HSA-88485847 genes
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.