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Pathway Human Homo sapiens

Metabolism of lipids

R-HSA-556833 in Reactome release 97: under Metabolism, with 758 genes placed in it by the mapping files and 10 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-556833 (mouse), R-RNO-556833 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 758 genes in this human pathway; showing 501 to 600, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 6 of 8
GenePECRAuthorityHGNC:18281Mapping file id55825 NCBI fileEvidenceTAS
GenePEMTAuthorityHGNC:8830Mapping file id10400 NCBI fileEvidenceTAS
GenePEX11AAuthorityHGNC:8852Mapping file id8800 NCBI fileEvidenceTAS
GenePGPAuthorityHGNC:8909Mapping file id283871 NCBI fileEvidenceTAS
GenePGS1AuthorityHGNC:30029Mapping file id9489 NCBI fileEvidenceIEA
GenePHOSPHO1AuthorityHGNC:16815Mapping file id162466 NCBI fileEvidenceTAS
GenePHYHAuthorityHGNC:8940Mapping file id5264 NCBI fileEvidenceTAS
GenePI4K2AAuthorityHGNC:30031Mapping file id55361 NCBI fileEvidenceTAS
GenePI4K2BAuthorityHGNC:18215Mapping file id55300 NCBI fileEvidenceTAS
GenePI4KAAuthorityHGNC:8983Mapping file id5297 NCBI fileEvidenceTAS
GenePI4KBAuthorityHGNC:8984Mapping file id5298 NCBI fileEvidenceTAS
GenePIAS4AuthorityHGNC:17002Mapping file id51588 NCBI fileEvidenceTAS
GenePIK3C2AAuthorityHGNC:8971Mapping file id5286 NCBI fileEvidenceTAS
GenePIK3C2BAuthorityHGNC:8972Mapping file id5287 NCBI fileEvidenceTAS
GenePIK3C2GAuthorityHGNC:8973Mapping file id5288 NCBI fileEvidenceTAS
GenePIK3C3AuthorityHGNC:8974Mapping file id5289 NCBI fileEvidenceTAS
GenePIK3CAAuthorityHGNC:8975Mapping file id5290 NCBI fileEvidenceTAS
GenePIK3CBAuthorityHGNC:8976Mapping file id5291 NCBI fileEvidenceTAS
GenePIK3CDAuthorityHGNC:8977Mapping file id5293 NCBI fileEvidenceTAS
GenePIK3CGAuthorityHGNC:8978Mapping file id5294 NCBI fileEvidenceTAS
GenePIK3R1AuthorityHGNC:8979Mapping file id5295 NCBI fileEvidenceTAS
GenePIK3R2AuthorityHGNC:8980Mapping file id5296 NCBI fileEvidenceTAS
GenePIK3R3AuthorityHGNC:8981Mapping file id8503 NCBI fileEvidenceTAS
GenePIK3R4AuthorityHGNC:8982Mapping file id30849 NCBI fileEvidenceTAS
GenePIK3R5AuthorityHGNC:30035Mapping file id23533 NCBI fileEvidenceTAS
GenePIK3R6AuthorityHGNC:27101Mapping file id146850 NCBI fileEvidenceTAS
GenePIKFYVEAuthorityHGNC:23785Mapping file id200576 NCBI fileEvidenceIEA, TAS
GenePIP4K2AAuthorityHGNC:8997Mapping file id5305 NCBI fileEvidenceTAS
GenePIP4K2BAuthorityHGNC:8998Mapping file id8396 NCBI fileEvidenceTAS
GenePIP4K2CAuthorityHGNC:23786Mapping file id79837 NCBI fileEvidenceTAS
GenePIP4P1AuthorityHGNC:19299Mapping file id90809 NCBI fileEvidenceTAS
GenePIP5K1AAuthorityHGNC:8994Mapping file id8394 NCBI fileEvidenceTAS
GenePIP5K1BAuthorityHGNC:8995Mapping file id8395 NCBI fileEvidenceTAS
GenePIP5K1CAuthorityHGNC:8996Mapping file id23396 NCBI fileEvidenceTAS
GenePISDAuthorityHGNC:8999Mapping file id23761 NCBI fileEvidenceIEA
GenePITPNBAuthorityHGNC:9002Mapping file id23760 NCBI fileEvidenceTAS
GenePITPNM1AuthorityHGNC:9003Mapping file id9600 NCBI fileEvidenceTAS
GenePITPNM2AuthorityHGNC:21044Mapping file id57605 NCBI fileEvidenceTAS
GenePITPNM3AuthorityHGNC:21043Mapping file id83394 NCBI fileEvidenceTAS
GenePLA1AAuthorityHGNC:17661Mapping file id51365 NCBI fileEvidenceTAS
GenePLA2G10AuthorityHGNC:9029Mapping file id8399 NCBI fileEvidenceTAS
GenePLA2G12AAuthorityHGNC:18554Mapping file id81579 NCBI fileEvidenceTAS
GenePLA2G15AuthorityHGNC:17163Mapping file id23659 NCBI fileEvidenceTAS
GenePLA2G1BAuthorityHGNC:9030Mapping file id5319 NCBI fileEvidenceTAS
GenePLA2G2AAuthorityHGNC:9031Mapping file id5320 NCBI fileEvidenceTAS
GenePLA2G2DAuthorityHGNC:9033Mapping file id26279 NCBI fileEvidenceTAS
GenePLA2G2EAuthorityHGNC:13414Mapping file id30814 NCBI fileEvidenceTAS
GenePLA2G2FAuthorityHGNC:30040Mapping file id64600 NCBI fileEvidenceTAS
GenePLA2G3AuthorityHGNC:17934Mapping file id50487 NCBI fileEvidenceTAS
GenePLA2G4AAuthorityHGNC:9035Mapping file id5321 NCBI fileEvidenceTAS
GenePLA2G4BAuthorityHGNC:9036Mapping file id100137049 NCBI fileEvidenceTAS
GenePLA2G4CAuthorityHGNC:9037Mapping file id8605 NCBI fileEvidenceTAS
GenePLA2G4DAuthorityHGNC:30038Mapping file id283748 NCBI fileEvidenceTAS
GenePLA2G4EAuthorityHGNC:24791Mapping file id123745 NCBI fileEvidenceTAS
GenePLA2G4FAuthorityHGNC:27396Mapping file id255189 NCBI fileEvidenceTAS
GenePLA2G5AuthorityHGNC:9038Mapping file id5322 NCBI fileEvidenceTAS
GenePLA2G6AuthorityHGNC:9039Mapping file id8398 NCBI fileEvidenceIEA, TAS
GenePLA2R1AuthorityHGNC:9042Mapping file id22925 NCBI fileEvidenceTAS
GenePLAAT1AuthorityHGNC:14922Mapping file id57110 NCBI fileEvidenceTAS
GenePLAAT2AuthorityHGNC:17824Mapping file id54979 NCBI fileEvidenceTAS
GenePLAAT3AuthorityHGNC:17825Mapping file id11145 NCBI fileEvidenceTAS
GenePLAAT4AuthorityHGNC:9869Mapping file id5920 NCBI fileEvidenceTAS
GenePLAAT5AuthorityHGNC:24978Mapping file id117245 NCBI fileEvidenceTAS
GenePLB1AuthorityHGNC:30041Mapping file id151056 NCBI fileEvidenceTAS
GenePLBD1AuthorityHGNC:26215Mapping file id79887 NCBI fileEvidenceTAS
GenePLD1AuthorityHGNC:9067Mapping file id5337 NCBI fileEvidenceIEA, TAS
GenePLD2AuthorityHGNC:9068Mapping file id5338 NCBI fileEvidenceIEA, TAS
GenePLD3AuthorityHGNC:17158Mapping file id23646 NCBI fileEvidenceIEA
GenePLD4AuthorityHGNC:23792Mapping file id122618 NCBI fileEvidenceIEA
GenePLD6AuthorityHGNC:30447Mapping file id201164 NCBI fileEvidenceIEA, TAS
GenePLEKHA1AuthorityHGNC:14335Mapping file id59338 NCBI fileEvidenceTAS
GenePLEKHA2AuthorityHGNC:14336Mapping file id59339 NCBI fileEvidenceTAS
GenePLEKHA3AuthorityHGNC:14338Mapping file id65977 NCBI fileEvidenceTAS
GenePLEKHA4AuthorityHGNC:14339Mapping file id57664 NCBI fileEvidenceTAS
GenePLEKHA5AuthorityHGNC:30036Mapping file id54477 NCBI fileEvidenceTAS
GenePLEKHA6AuthorityHGNC:17053Mapping file id22874 NCBI fileEvidenceTAS
GenePLEKHA8AuthorityHGNC:30037Mapping file id84725 NCBI fileEvidenceTAS
GenePLIN1AuthorityHGNC:9076Mapping file id5346 NCBI fileEvidenceIEA
GenePLIN2AuthorityHGNC:248Mapping file id123 NCBI fileEvidenceTAS
GenePLIN3AuthorityHGNC:16893Mapping file id10226 NCBI fileEvidenceTAS
GenePLPP1AuthorityHGNC:9228Mapping file id8611 NCBI fileEvidenceTAS
GenePLPP2AuthorityHGNC:9230Mapping file id8612 NCBI fileEvidenceTAS
GenePLPP3AuthorityHGNC:9229Mapping file id8613 NCBI fileEvidenceTAS
GenePLPP6AuthorityHGNC:23682Mapping file id403313 NCBI fileEvidenceTAS
GenePMVKAuthorityHGNC:9141Mapping file id10654 NCBI fileEvidenceTAS
GenePNPLA2AuthorityHGNC:30802Mapping file id57104 NCBI fileEvidenceTAS
GenePNPLA3AuthorityHGNC:18590Mapping file id80339 NCBI fileEvidenceTAS
GenePNPLA4AuthorityHGNC:24887Mapping file id8228 NCBI fileEvidenceTAS
GenePNPLA5AuthorityHGNC:24888Mapping file id150379 NCBI fileEvidenceTAS
GenePNPLA6AuthorityHGNC:16268Mapping file id10908 NCBI fileEvidenceTAS
GenePNPLA7AuthorityHGNC:24768Mapping file id375775 NCBI fileEvidenceIEA
GenePNPLA8AuthorityHGNC:28900Mapping file id50640 NCBI fileEvidenceTAS
GenePOMCAuthorityHGNC:9201Mapping file id5443 NCBI fileEvidenceTAS
GenePON1AuthorityHGNC:9204Mapping file id5444 NCBI fileEvidenceTAS
GenePON2AuthorityHGNC:9205Mapping file id5445 NCBI fileEvidenceTAS
GenePON3AuthorityHGNC:9206Mapping file id5446 NCBI fileEvidenceTAS
GenePPARAAuthorityHGNC:9232Mapping file id5465 NCBI fileEvidenceIEA, TAS
GenePPARDAuthorityHGNC:9235Mapping file id5467 NCBI fileEvidenceTAS
GenePPARGAuthorityHGNC:9236Mapping file id5468 NCBI fileEvidenceTAS
GenePPARGC1AAuthorityHGNC:9237Mapping file id10891 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.