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Pathway Human Homo sapiens

Disease

R-HSA-1643685 in Reactome release 97: a top-level pathway, with 2,550 genes placed in it by the mapping files and 12 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id; neither of the other two lists holds it. Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 2,550 genes in this human pathway; showing 601 to 700, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 7 of 26
GeneFGF17AuthorityHGNC:3673Mapping file id8822 NCBI fileEvidenceTAS
GeneFGF18AuthorityHGNC:3674Mapping file id8817 NCBI fileEvidenceTAS
GeneFGF19AuthorityHGNC:3675Mapping file id9965 NCBI fileEvidenceTAS
GeneFGF2AuthorityHGNC:3676Mapping file id2247 NCBI fileEvidenceIEA, TAS
GeneFGF20AuthorityHGNC:3677Mapping file id26281 NCBI fileEvidenceTAS
GeneFGF22AuthorityHGNC:3679Mapping file id27006 NCBI fileEvidenceTAS
GeneFGF23AuthorityHGNC:3680Mapping file id8074 NCBI fileEvidenceTAS
GeneFGF3AuthorityHGNC:3681Mapping file id2248 NCBI fileEvidenceTAS
GeneFGF4AuthorityHGNC:3682Mapping file id2249 NCBI fileEvidenceTAS
GeneFGF5AuthorityHGNC:3683Mapping file id2250 NCBI fileEvidenceTAS
GeneFGF6AuthorityHGNC:3684Mapping file id2251 NCBI fileEvidenceTAS
GeneFGF7AuthorityHGNC:3685Mapping file id2252 NCBI fileEvidenceTAS
GeneFGF8AuthorityHGNC:3686Mapping file id2253 NCBI fileEvidenceTAS
GeneFGF9AuthorityHGNC:3687Mapping file id2254 NCBI fileEvidenceTAS
GeneFGFR1AuthorityHGNC:3688Mapping file id2260 NCBI fileEvidenceTAS
GeneFGFR1OP2AuthorityHGNC:23098Mapping file id26127 NCBI fileEvidenceTAS
GeneFGFR2AuthorityHGNC:3689Mapping file id2263 NCBI fileEvidenceIEA, TAS
GeneFGFR3AuthorityHGNC:3690Mapping file id2261 NCBI fileEvidenceTAS
GeneFGFR4AuthorityHGNC:3691Mapping file id2264 NCBI fileEvidenceTAS
GeneFGGAuthorityHGNC:3694Mapping file id2266 NCBI fileEvidenceTAS
GeneFGRAuthorityHGNC:3697Mapping file id2268 NCBI fileEvidenceTAS
GeneFIP1L1AuthorityHGNC:19124Mapping file id81608 NCBI fileEvidenceTAS
GeneFKBP1AAuthorityHGNC:3711Mapping file id2280 NCBI fileEvidenceTAS
GeneFKBP4AuthorityHGNC:3720Mapping file id2288 NCBI fileEvidenceTAS
GeneFLT3AuthorityHGNC:3765Mapping file id2322 NCBI fileEvidenceIEA, TAS
GeneFLT3LGAuthorityHGNC:3766Mapping file id2323 NCBI fileEvidenceTAS
GeneFMO3AuthorityHGNC:3771Mapping file id2328 NCBI fileEvidenceTAS
GeneFMODAuthorityHGNC:3774Mapping file id2331 NCBI fileEvidenceTAS
GeneFN1AuthorityHGNC:3778Mapping file id2335 NCBI fileEvidenceTAS
GeneFNTAAuthorityHGNC:3782Mapping file id2339 NCBI fileEvidenceTAS
GeneFNTBAuthorityHGNC:3785Mapping file id2342 NCBI fileEvidenceTAS
GeneFOXM1AuthorityHGNC:3818Mapping file id2305 NCBI fileEvidenceTAS
GeneFOXO1AuthorityHGNC:3819Mapping file id2308 NCBI fileEvidenceTAS
GeneFOXO3AuthorityHGNC:3821Mapping file id2309 NCBI fileEvidenceIEA, TAS
GeneFOXO4AuthorityHGNC:7139Mapping file id4303 NCBI fileEvidenceTAS
GeneFOXO6AuthorityHGNC:24814Mapping file idENSG00000204060 Ensembl fileEvidenceTAS
GeneFRS2AuthorityHGNC:16971Mapping file id10818 NCBI fileEvidenceTAS
GeneFRS3AuthorityHGNC:16970Mapping file id10817 NCBI fileEvidenceTAS
GeneFURINAuthorityHGNC:8568Mapping file id5045 NCBI fileEvidenceTAS
GeneFUSAuthorityHGNC:4010Mapping file id2521 NCBI fileEvidenceTAS
GeneFUT8AuthorityHGNC:4019Mapping file id2530 NCBI fileEvidenceTAS
GeneFXR1AuthorityHGNC:4023Mapping file id8087 NCBI fileEvidenceTAS
GeneFXYD1AuthorityHGNC:4025Mapping file id5348 NCBI fileEvidenceTAS
GeneFXYD2AuthorityHGNC:4026Mapping file id486 NCBI fileEvidenceTAS
GeneFXYD3AuthorityHGNC:4027Mapping file id5349 NCBI fileEvidenceTAS
GeneFXYD4AuthorityHGNC:4028Mapping file id53828 NCBI fileEvidenceTAS
GeneFXYD6AuthorityHGNC:4030Mapping file id53826 NCBI fileEvidenceTAS
GeneFXYD7AuthorityHGNC:4034Mapping file id53822 NCBI fileEvidenceTAS
GeneFYNAuthorityHGNC:4037Mapping file id2534 NCBI fileEvidenceTAS
GeneFZD4AuthorityHGNC:4042Mapping file id8322 NCBI fileEvidenceTAS
GeneFZD5AuthorityHGNC:4043Mapping file id7855 NCBI fileEvidenceTAS
GeneFZD6AuthorityHGNC:4044Mapping file id8323 NCBI fileEvidenceTAS
GeneFZD7AuthorityHGNC:4045Mapping file id8324 NCBI fileEvidenceIEA, TAS
GeneFZD8AuthorityHGNC:4046Mapping file id8325 NCBI fileEvidenceTAS
GeneFZR1AuthorityHGNC:24824Mapping file id51343 NCBI fileEvidenceTAS
GeneG3BP1AuthorityHGNC:30292Mapping file id10146 NCBI fileEvidenceTAS
GeneG3BP2AuthorityHGNC:30291Mapping file id9908 NCBI fileEvidenceTAS
GeneG6PC1AuthorityHGNC:4056Mapping file id2538 NCBI fileEvidenceTAS
GeneG6PC3AuthorityHGNC:24861Mapping file id92579 NCBI fileEvidenceTAS
GeneGAAAuthorityHGNC:4065Mapping file id2548 NCBI fileEvidenceTAS
GeneGAB1AuthorityHGNC:4066Mapping file id2549 NCBI fileEvidenceTAS
GeneGAB2AuthorityHGNC:14458Mapping file id9846 NCBI fileEvidenceIEA, TAS
GeneGALEAuthorityHGNC:4116Mapping file id2582 NCBI fileEvidenceTAS
GeneGALK1AuthorityHGNC:4118Mapping file id2584 NCBI fileEvidenceTAS
GeneGALMAuthorityHGNC:24063Mapping file id130589 NCBI fileEvidenceTAS
GeneGALNSAuthorityHGNC:4122Mapping file id2588 NCBI fileEvidenceTAS
GeneGALNT1AuthorityHGNC:4123Mapping file id2589 NCBI fileEvidenceIEA, TAS
GeneGALNT12AuthorityHGNC:19877Mapping file id79695 NCBI fileEvidenceTAS
GeneGALNT3AuthorityHGNC:4125Mapping file id2591 NCBI fileEvidenceTAS
GeneGALTAuthorityHGNC:4135Mapping file id2592 NCBI fileEvidenceTAS
GeneGANABAuthorityHGNC:4138Mapping file id23193 NCBI fileEvidenceTAS
GeneGAS6AuthorityHGNC:4168Mapping file id2621 NCBI fileEvidenceTAS
GeneGATAD2AAuthorityHGNC:29989Mapping file id54815 NCBI fileEvidenceTAS
GeneGATAD2BAuthorityHGNC:30778Mapping file id57459 NCBI fileEvidenceTAS
GeneGBE1AuthorityHGNC:4180Mapping file id2632 NCBI fileEvidenceTAS
GeneGBF1AuthorityHGNC:4181Mapping file id8729 NCBI fileEvidenceTAS
GeneGBP1AuthorityHGNC:4182Mapping file id2633 NCBI fileEvidenceTAS
GeneGBP2AuthorityHGNC:4183Mapping file id2634 NCBI fileEvidenceTAS
GeneGBP3AuthorityHGNC:4184Mapping file id2635 NCBI fileEvidenceTAS
GeneGBP4AuthorityHGNC:20480Mapping file id115361 NCBI fileEvidenceTAS
GeneGBP6AuthorityHGNC:25395Mapping file id163351 NCBI fileEvidenceTAS
GeneGCC2AuthorityHGNC:23218Mapping file id9648 NCBI fileEvidenceTAS
GeneGCKAuthorityHGNC:4195Mapping file id2645 NCBI fileEvidenceTAS
GeneGCKRAuthorityHGNC:4196Mapping file id2646 NCBI fileEvidenceTAS
GeneGCLCAuthorityHGNC:4311Mapping file id2729 NCBI fileEvidenceTAS
GeneGCLMAuthorityHGNC:4312Mapping file id2730 NCBI fileEvidenceTAS
GeneGEMIN2AuthorityHGNC:10884Mapping file id8487 NCBI fileEvidenceTAS
GeneGEMIN4AuthorityHGNC:15717Mapping file id50628 NCBI fileEvidenceTAS
GeneGEMIN5AuthorityHGNC:20043Mapping file id25929 NCBI fileEvidenceTAS
GeneGEMIN6AuthorityHGNC:20044Mapping file id79833 NCBI fileEvidenceTAS
GeneGEMIN7AuthorityHGNC:20045Mapping file id79760 NCBI fileEvidenceTAS
GeneGEMIN8AuthorityHGNC:26044Mapping file id54960 NCBI fileEvidenceTAS
GeneGFPT1AuthorityHGNC:4241Mapping file id2673 NCBI fileEvidenceTAS
GeneGGCXAuthorityHGNC:4247Mapping file id2677 NCBI fileEvidenceTAS
GeneGGT1AuthorityHGNC:4250Mapping file id2678 NCBI fileEvidenceTAS
GeneGGT5AuthorityHGNC:4260Mapping file id2687 NCBI fileEvidenceTAS
GeneGJA1AuthorityHGNC:4274Mapping file id2697 NCBI fileEvidenceIEA
GeneGLB1AuthorityHGNC:4298Mapping file id2720 NCBI fileEvidenceTAS
GeneGNAI1AuthorityHGNC:4384Mapping file id2770 NCBI fileEvidenceIEA
GeneGNAI2AuthorityHGNC:4385Mapping file id2771 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.