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Pathway Human Homo sapiens

Metabolism of lipids

R-HSA-556833 in Reactome release 97: under Metabolism, with 758 genes placed in it by the mapping files and 10 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-556833 (mouse), R-RNO-556833 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 758 genes in this human pathway; showing 101 to 200, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 2 of 8
GeneARNT2AuthorityHGNC:16876Mapping file id9915 NCBI fileEvidenceTAS
GeneARSAAuthorityHGNC:713Mapping file id410 NCBI fileEvidenceTAS
GeneARSBAuthorityHGNC:714Mapping file id411 NCBI fileEvidenceTAS
GeneARSDAuthorityHGNC:717Mapping file id414 NCBI fileEvidenceTAS
GeneARSFAuthorityHGNC:721Mapping file id416 NCBI fileEvidenceTAS
GeneARSGAuthorityHGNC:24102Mapping file id22901 NCBI fileEvidenceTAS
GeneARSHAuthorityHGNC:32488Mapping file id347527 NCBI fileEvidenceTAS
GeneARSIAuthorityHGNC:32521Mapping file id340075 NCBI fileEvidenceTAS
GeneARSJAuthorityHGNC:26286Mapping file id79642 NCBI fileEvidenceTAS
GeneARSKAuthorityHGNC:25239Mapping file id153642 NCBI fileEvidenceTAS
GeneARSLAuthorityHGNC:719Mapping file id415 NCBI fileEvidenceTAS
GeneARV1AuthorityHGNC:29561Mapping file id64801 NCBI fileEvidenceTAS
GeneASAH1AuthorityHGNC:735Mapping file id427 NCBI fileEvidenceTAS
GeneASAH2AuthorityHGNC:18860Mapping file id56624 NCBI fileEvidenceTAS
GeneAWAT1AuthorityHGNC:23252Mapping file id158833 NCBI fileEvidenceTAS
GeneAWAT2AuthorityHGNC:23251Mapping file id158835 NCBI fileEvidenceTAS
GeneB3GALNT1AuthorityHGNC:918Mapping file id8706 NCBI fileEvidenceTAS
GeneB3GALT4AuthorityHGNC:919Mapping file id8705 NCBI fileEvidenceTAS
GeneB3GNT5AuthorityHGNC:15684Mapping file id84002 NCBI fileEvidenceTAS
GeneB4GALNT1AuthorityHGNC:4117Mapping file id2583 NCBI fileEvidenceTAS
GeneB4GALT5AuthorityHGNC:928Mapping file id9334 NCBI fileEvidenceTAS
GeneB4GALT6AuthorityHGNC:929Mapping file id9331 NCBI fileEvidenceTAS
GeneBAATAuthorityHGNC:932Mapping file id570 NCBI fileEvidenceTAS
GeneBCHEAuthorityHGNC:983Mapping file id590 NCBI fileEvidenceTAS
GeneBDH1AuthorityHGNC:1027Mapping file id622 NCBI fileEvidenceTAS
GeneBDH2AuthorityHGNC:32389Mapping file id56898 NCBI fileEvidenceTAS
GeneBMAL1AuthorityHGNC:701Mapping file id406 NCBI fileEvidenceIEA
GeneBMXAuthorityHGNC:1079Mapping file id660 NCBI fileEvidenceTAS
GeneCARM1AuthorityHGNC:23393Mapping file id10498 NCBI fileEvidenceIEA, TAS
GeneCAV1AuthorityHGNC:1527Mapping file id857 NCBI fileEvidenceIEA
GeneCBR1AuthorityHGNC:1548Mapping file id873 NCBI fileEvidenceTAS
GeneCBR4AuthorityHGNC:25891Mapping file id84869 NCBI fileEvidenceTAS
GeneCCNCAuthorityHGNC:1581Mapping file id892 NCBI fileEvidenceTAS
GeneCD36AuthorityHGNC:1663Mapping file id948 NCBI fileEvidenceTAS
GeneCDIPTAuthorityHGNC:1769Mapping file id10423 NCBI fileEvidenceTAS
GeneCDK19AuthorityHGNC:19338Mapping file id23097 NCBI fileEvidenceTAS
GeneCDK8AuthorityHGNC:1779Mapping file id1024 NCBI fileEvidenceTAS
GeneCDS1AuthorityHGNC:1800Mapping file id1040 NCBI fileEvidenceTAS
GeneCDS2AuthorityHGNC:1801Mapping file id8760 NCBI fileEvidenceTAS
GeneCEPT1AuthorityHGNC:24289Mapping file id10390 NCBI fileEvidenceTAS
GeneCERKAuthorityHGNC:19256Mapping file id64781 NCBI fileEvidenceTAS
GeneCERS1AuthorityHGNC:14253Mapping file id10715 NCBI fileEvidenceTAS
GeneCERS2AuthorityHGNC:14076Mapping file id29956 NCBI fileEvidenceTAS
GeneCERS3AuthorityHGNC:23752Mapping file id204219 NCBI fileEvidenceTAS
GeneCERS4AuthorityHGNC:23747Mapping file id79603 NCBI fileEvidenceTAS
GeneCERS5AuthorityHGNC:23749Mapping file id91012 NCBI fileEvidenceTAS
GeneCERS6AuthorityHGNC:23826Mapping file id253782 NCBI fileEvidenceTAS
GeneCERT1AuthorityHGNC:2205Mapping file id10087 NCBI fileEvidenceTAS
GeneCGAAuthorityHGNC:1885Mapping file id1081 NCBI fileEvidenceTAS
GeneCH25HAuthorityHGNC:1907Mapping file id9023 NCBI fileEvidenceTAS
GeneCHATAuthorityHGNC:1912Mapping file id1103 NCBI fileEvidenceTAS
GeneCHD9AuthorityHGNC:25701Mapping file id80205 NCBI fileEvidenceIEA, TAS
GeneCHKAAuthorityHGNC:1937Mapping file id1119 NCBI fileEvidenceTAS
GeneCHKBAuthorityHGNC:1938Mapping file id1120 NCBI fileEvidenceTAS
GeneCHPT1AuthorityHGNC:17852Mapping file id56994 NCBI fileEvidenceTAS
GeneCIDEAAuthorityHGNC:1976Mapping file id1149 NCBI fileEvidenceTAS
GeneCIDECAuthorityHGNC:24229Mapping file id63924 NCBI fileEvidenceTAS
GeneCLOCKAuthorityHGNC:2082Mapping file id9575 NCBI fileEvidenceIEA
GeneCPNE1AuthorityHGNC:2314Mapping file id8904 NCBI fileEvidenceTAS
GeneCPNE3AuthorityHGNC:2316Mapping file id8895 NCBI fileEvidenceTAS
GeneCPNE6AuthorityHGNC:2319Mapping file id9362 NCBI fileEvidenceTAS
GeneCPNE7AuthorityHGNC:2320Mapping file id27132 NCBI fileEvidenceTAS
GeneCPT1AAuthorityHGNC:2328Mapping file id1374 NCBI fileEvidenceIEA, TAS
GeneCPT1BAuthorityHGNC:2329Mapping file id1375 NCBI fileEvidenceTAS
GeneCPT2AuthorityHGNC:2330Mapping file id1376 NCBI fileEvidenceTAS
GeneCRATAuthorityHGNC:2342Mapping file id1384 NCBI fileEvidenceTAS
GeneCREBBPAuthorityHGNC:2348Mapping file id1387 NCBI fileEvidenceIEA, TAS
GeneCRLS1AuthorityHGNC:16148Mapping file id54675 NCBI fileEvidenceTAS
GeneCROTAuthorityHGNC:2366Mapping file id54677 NCBI fileEvidenceTAS
GeneCSNK1G2AuthorityHGNC:2455Mapping file id1455 NCBI fileEvidenceTAS
GeneCSNK2A1AuthorityHGNC:2457Mapping file id1457 NCBI fileEvidenceTAS
GeneCSNK2A2AuthorityHGNC:2459Mapping file id1459 NCBI fileEvidenceTAS
GeneCSNK2BAuthorityHGNC:2460Mapping file id1460 NCBI fileEvidenceTAS
GeneCTSAAuthorityHGNC:9251Mapping file id5476 NCBI fileEvidenceTAS
GeneCUBNAuthorityHGNC:2548Mapping file id8029 NCBI fileEvidenceTAS
GeneCYB5BAuthorityHGNC:24374Mapping file id80777 NCBI fileEvidenceTAS
GeneCYP11A1AuthorityHGNC:2590Mapping file id1583 NCBI fileEvidenceTAS
GeneCYP11B1AuthorityHGNC:2591Mapping file id1584 NCBI fileEvidenceTAS
GeneCYP11B2AuthorityHGNC:2592Mapping file id1585 NCBI fileEvidenceTAS
GeneCYP17A1AuthorityHGNC:2593Mapping file id1586 NCBI fileEvidenceTAS
GeneCYP19A1AuthorityHGNC:2594Mapping file id1588 NCBI fileEvidenceTAS
GeneCYP1A1AuthorityHGNC:2595Mapping file id1543 NCBI fileEvidenceTAS
GeneCYP1A2AuthorityHGNC:2596Mapping file id1544 NCBI fileEvidenceTAS
GeneCYP1B1AuthorityHGNC:2597Mapping file id1545 NCBI fileEvidenceTAS
GeneCYP21A2AuthorityHGNC:2600Mapping file id1589 NCBI fileEvidenceTAS
GeneCYP24A1AuthorityHGNC:2602Mapping file id1591 NCBI fileEvidenceTAS
GeneCYP27A1AuthorityHGNC:2605Mapping file id1593 NCBI fileEvidenceTAS
GeneCYP27B1AuthorityHGNC:2606Mapping file id1594 NCBI fileEvidenceTAS
GeneCYP2C19AuthorityHGNC:2621Mapping file id1557 NCBI fileEvidenceTAS
GeneCYP2C8AuthorityHGNC:2622Mapping file id1558 NCBI fileEvidenceTAS
GeneCYP2C9AuthorityHGNC:2623Mapping file id1559 NCBI fileEvidenceTAS
GeneCYP2D6AuthorityHGNC:2625Mapping file id1565 NCBI fileEvidenceTAS
GeneCYP2E1AuthorityHGNC:2631Mapping file id1571 NCBI fileEvidenceTAS
GeneCYP2J2AuthorityHGNC:2634Mapping file id1573 NCBI fileEvidenceTAS
GeneCYP2R1AuthorityHGNC:20580Mapping file id120227 NCBI fileEvidenceTAS
GeneCYP2U1AuthorityHGNC:20582Mapping file id113612 NCBI fileEvidenceTAS
GeneCYP39A1AuthorityHGNC:17449Mapping file id51302 NCBI fileEvidenceTAS
GeneCYP3A4AuthorityHGNC:2637Mapping file id1576 NCBI fileEvidenceTAS
GeneCYP46A1AuthorityHGNC:2641Mapping file id10858 NCBI fileEvidenceTAS
GeneCYP4A11AuthorityHGNC:2642Mapping file id1579 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.