Pathway Human Homo sapiens
Metabolism of lipids
R-HSA-556833 in Reactome release 97: under Metabolism, with 758 genes placed in it by the mapping files and 10 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-556833 (mouse), R-RNO-556833 (rat). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this human pathway
The mapping files place 758 genes in this human pathway; showing 101 to 200, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GeneARNT2 | AuthorityHGNC:16876 | Mapping file id9915 NCBI file | EvidenceTAS |
| GeneARSA | AuthorityHGNC:713 | Mapping file id410 NCBI file | EvidenceTAS |
| GeneARSB | AuthorityHGNC:714 | Mapping file id411 NCBI file | EvidenceTAS |
| GeneARSD | AuthorityHGNC:717 | Mapping file id414 NCBI file | EvidenceTAS |
| GeneARSF | AuthorityHGNC:721 | Mapping file id416 NCBI file | EvidenceTAS |
| GeneARSG | AuthorityHGNC:24102 | Mapping file id22901 NCBI file | EvidenceTAS |
| GeneARSH | AuthorityHGNC:32488 | Mapping file id347527 NCBI file | EvidenceTAS |
| GeneARSI | AuthorityHGNC:32521 | Mapping file id340075 NCBI file | EvidenceTAS |
| GeneARSJ | AuthorityHGNC:26286 | Mapping file id79642 NCBI file | EvidenceTAS |
| GeneARSK | AuthorityHGNC:25239 | Mapping file id153642 NCBI file | EvidenceTAS |
| GeneARSL | AuthorityHGNC:719 | Mapping file id415 NCBI file | EvidenceTAS |
| GeneARV1 | AuthorityHGNC:29561 | Mapping file id64801 NCBI file | EvidenceTAS |
| GeneASAH1 | AuthorityHGNC:735 | Mapping file id427 NCBI file | EvidenceTAS |
| GeneASAH2 | AuthorityHGNC:18860 | Mapping file id56624 NCBI file | EvidenceTAS |
| GeneAWAT1 | AuthorityHGNC:23252 | Mapping file id158833 NCBI file | EvidenceTAS |
| GeneAWAT2 | AuthorityHGNC:23251 | Mapping file id158835 NCBI file | EvidenceTAS |
| GeneB3GALNT1 | AuthorityHGNC:918 | Mapping file id8706 NCBI file | EvidenceTAS |
| GeneB3GALT4 | AuthorityHGNC:919 | Mapping file id8705 NCBI file | EvidenceTAS |
| GeneB3GNT5 | AuthorityHGNC:15684 | Mapping file id84002 NCBI file | EvidenceTAS |
| GeneB4GALNT1 | AuthorityHGNC:4117 | Mapping file id2583 NCBI file | EvidenceTAS |
| GeneB4GALT5 | AuthorityHGNC:928 | Mapping file id9334 NCBI file | EvidenceTAS |
| GeneB4GALT6 | AuthorityHGNC:929 | Mapping file id9331 NCBI file | EvidenceTAS |
| GeneBAAT | AuthorityHGNC:932 | Mapping file id570 NCBI file | EvidenceTAS |
| GeneBCHE | AuthorityHGNC:983 | Mapping file id590 NCBI file | EvidenceTAS |
| GeneBDH1 | AuthorityHGNC:1027 | Mapping file id622 NCBI file | EvidenceTAS |
| GeneBDH2 | AuthorityHGNC:32389 | Mapping file id56898 NCBI file | EvidenceTAS |
| GeneBMAL1 | AuthorityHGNC:701 | Mapping file id406 NCBI file | EvidenceIEA |
| GeneBMX | AuthorityHGNC:1079 | Mapping file id660 NCBI file | EvidenceTAS |
| GeneCARM1 | AuthorityHGNC:23393 | Mapping file id10498 NCBI file | EvidenceIEA, TAS |
| GeneCAV1 | AuthorityHGNC:1527 | Mapping file id857 NCBI file | EvidenceIEA |
| GeneCBR1 | AuthorityHGNC:1548 | Mapping file id873 NCBI file | EvidenceTAS |
| GeneCBR4 | AuthorityHGNC:25891 | Mapping file id84869 NCBI file | EvidenceTAS |
| GeneCCNC | AuthorityHGNC:1581 | Mapping file id892 NCBI file | EvidenceTAS |
| GeneCD36 | AuthorityHGNC:1663 | Mapping file id948 NCBI file | EvidenceTAS |
| GeneCDIPT | AuthorityHGNC:1769 | Mapping file id10423 NCBI file | EvidenceTAS |
| GeneCDK19 | AuthorityHGNC:19338 | Mapping file id23097 NCBI file | EvidenceTAS |
| GeneCDK8 | AuthorityHGNC:1779 | Mapping file id1024 NCBI file | EvidenceTAS |
| GeneCDS1 | AuthorityHGNC:1800 | Mapping file id1040 NCBI file | EvidenceTAS |
| GeneCDS2 | AuthorityHGNC:1801 | Mapping file id8760 NCBI file | EvidenceTAS |
| GeneCEPT1 | AuthorityHGNC:24289 | Mapping file id10390 NCBI file | EvidenceTAS |
| GeneCERK | AuthorityHGNC:19256 | Mapping file id64781 NCBI file | EvidenceTAS |
| GeneCERS1 | AuthorityHGNC:14253 | Mapping file id10715 NCBI file | EvidenceTAS |
| GeneCERS2 | AuthorityHGNC:14076 | Mapping file id29956 NCBI file | EvidenceTAS |
| GeneCERS3 | AuthorityHGNC:23752 | Mapping file id204219 NCBI file | EvidenceTAS |
| GeneCERS4 | AuthorityHGNC:23747 | Mapping file id79603 NCBI file | EvidenceTAS |
| GeneCERS5 | AuthorityHGNC:23749 | Mapping file id91012 NCBI file | EvidenceTAS |
| GeneCERS6 | AuthorityHGNC:23826 | Mapping file id253782 NCBI file | EvidenceTAS |
| GeneCERT1 | AuthorityHGNC:2205 | Mapping file id10087 NCBI file | EvidenceTAS |
| GeneCGA | AuthorityHGNC:1885 | Mapping file id1081 NCBI file | EvidenceTAS |
| GeneCH25H | AuthorityHGNC:1907 | Mapping file id9023 NCBI file | EvidenceTAS |
| GeneCHAT | AuthorityHGNC:1912 | Mapping file id1103 NCBI file | EvidenceTAS |
| GeneCHD9 | AuthorityHGNC:25701 | Mapping file id80205 NCBI file | EvidenceIEA, TAS |
| GeneCHKA | AuthorityHGNC:1937 | Mapping file id1119 NCBI file | EvidenceTAS |
| GeneCHKB | AuthorityHGNC:1938 | Mapping file id1120 NCBI file | EvidenceTAS |
| GeneCHPT1 | AuthorityHGNC:17852 | Mapping file id56994 NCBI file | EvidenceTAS |
| GeneCIDEA | AuthorityHGNC:1976 | Mapping file id1149 NCBI file | EvidenceTAS |
| GeneCIDEC | AuthorityHGNC:24229 | Mapping file id63924 NCBI file | EvidenceTAS |
| GeneCLOCK | AuthorityHGNC:2082 | Mapping file id9575 NCBI file | EvidenceIEA |
| GeneCPNE1 | AuthorityHGNC:2314 | Mapping file id8904 NCBI file | EvidenceTAS |
| GeneCPNE3 | AuthorityHGNC:2316 | Mapping file id8895 NCBI file | EvidenceTAS |
| GeneCPNE6 | AuthorityHGNC:2319 | Mapping file id9362 NCBI file | EvidenceTAS |
| GeneCPNE7 | AuthorityHGNC:2320 | Mapping file id27132 NCBI file | EvidenceTAS |
| GeneCPT1A | AuthorityHGNC:2328 | Mapping file id1374 NCBI file | EvidenceIEA, TAS |
| GeneCPT1B | AuthorityHGNC:2329 | Mapping file id1375 NCBI file | EvidenceTAS |
| GeneCPT2 | AuthorityHGNC:2330 | Mapping file id1376 NCBI file | EvidenceTAS |
| GeneCRAT | AuthorityHGNC:2342 | Mapping file id1384 NCBI file | EvidenceTAS |
| GeneCREBBP | AuthorityHGNC:2348 | Mapping file id1387 NCBI file | EvidenceIEA, TAS |
| GeneCRLS1 | AuthorityHGNC:16148 | Mapping file id54675 NCBI file | EvidenceTAS |
| GeneCROT | AuthorityHGNC:2366 | Mapping file id54677 NCBI file | EvidenceTAS |
| GeneCSNK1G2 | AuthorityHGNC:2455 | Mapping file id1455 NCBI file | EvidenceTAS |
| GeneCSNK2A1 | AuthorityHGNC:2457 | Mapping file id1457 NCBI file | EvidenceTAS |
| GeneCSNK2A2 | AuthorityHGNC:2459 | Mapping file id1459 NCBI file | EvidenceTAS |
| GeneCSNK2B | AuthorityHGNC:2460 | Mapping file id1460 NCBI file | EvidenceTAS |
| GeneCTSA | AuthorityHGNC:9251 | Mapping file id5476 NCBI file | EvidenceTAS |
| GeneCUBN | AuthorityHGNC:2548 | Mapping file id8029 NCBI file | EvidenceTAS |
| GeneCYB5B | AuthorityHGNC:24374 | Mapping file id80777 NCBI file | EvidenceTAS |
| GeneCYP11A1 | AuthorityHGNC:2590 | Mapping file id1583 NCBI file | EvidenceTAS |
| GeneCYP11B1 | AuthorityHGNC:2591 | Mapping file id1584 NCBI file | EvidenceTAS |
| GeneCYP11B2 | AuthorityHGNC:2592 | Mapping file id1585 NCBI file | EvidenceTAS |
| GeneCYP17A1 | AuthorityHGNC:2593 | Mapping file id1586 NCBI file | EvidenceTAS |
| GeneCYP19A1 | AuthorityHGNC:2594 | Mapping file id1588 NCBI file | EvidenceTAS |
| GeneCYP1A1 | AuthorityHGNC:2595 | Mapping file id1543 NCBI file | EvidenceTAS |
| GeneCYP1A2 | AuthorityHGNC:2596 | Mapping file id1544 NCBI file | EvidenceTAS |
| GeneCYP1B1 | AuthorityHGNC:2597 | Mapping file id1545 NCBI file | EvidenceTAS |
| GeneCYP21A2 | AuthorityHGNC:2600 | Mapping file id1589 NCBI file | EvidenceTAS |
| GeneCYP24A1 | AuthorityHGNC:2602 | Mapping file id1591 NCBI file | EvidenceTAS |
| GeneCYP27A1 | AuthorityHGNC:2605 | Mapping file id1593 NCBI file | EvidenceTAS |
| GeneCYP27B1 | AuthorityHGNC:2606 | Mapping file id1594 NCBI file | EvidenceTAS |
| GeneCYP2C19 | AuthorityHGNC:2621 | Mapping file id1557 NCBI file | EvidenceTAS |
| GeneCYP2C8 | AuthorityHGNC:2622 | Mapping file id1558 NCBI file | EvidenceTAS |
| GeneCYP2C9 | AuthorityHGNC:2623 | Mapping file id1559 NCBI file | EvidenceTAS |
| GeneCYP2D6 | AuthorityHGNC:2625 | Mapping file id1565 NCBI file | EvidenceTAS |
| GeneCYP2E1 | AuthorityHGNC:2631 | Mapping file id1571 NCBI file | EvidenceTAS |
| GeneCYP2J2 | AuthorityHGNC:2634 | Mapping file id1573 NCBI file | EvidenceTAS |
| GeneCYP2R1 | AuthorityHGNC:20580 | Mapping file id120227 NCBI file | EvidenceTAS |
| GeneCYP2U1 | AuthorityHGNC:20582 | Mapping file id113612 NCBI file | EvidenceTAS |
| GeneCYP39A1 | AuthorityHGNC:17449 | Mapping file id51302 NCBI file | EvidenceTAS |
| GeneCYP3A4 | AuthorityHGNC:2637 | Mapping file id1576 NCBI file | EvidenceTAS |
| GeneCYP46A1 | AuthorityHGNC:2641 | Mapping file id10858 NCBI file | EvidenceTAS |
| GeneCYP4A11 | AuthorityHGNC:2642 | Mapping file id1579 NCBI file | EvidenceTAS |
Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.
- Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Children
- Biosynthesis of specialized proresolving mediators (SPMs)R-HSA-901867819 genes
- Fatty acid metabolismR-HSA-8978868175 genes
- Ketone body metabolismR-HSA-7418210 genes
- Lipid particle organizationR-HSA-89645726 genes
- Metabolism of steroidsR-HSA-8957322155 genes
- Phospholipid metabolismR-HSA-1483257212 genes
- Regulation of lipid metabolism by PPARalphaR-HSA-400206119 genes
- Sphingolipid metabolismR-HSA-428157107 genes
- Triglyceride metabolismR-HSA-897922738 genes
- Wax and plasmalogen biosynthesisR-HSA-88485847 genes
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.